Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq3 127 8e-26 seq1 127 8e-26 seq9 125 3e-25 seq7 116 1e-22 seq10 114 5e-22 seq5 109 2e-20 seq4 100 1e-17 >seq3 Length=135057546 Score = 127 bits (140), Expect = 8e-26 Identities = 99/118 (84%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||| | ||| | | | ||||||||| | |||||||| | Sbjct 10192082 TTTATGATACTATGCAATTTGTACGACCCGCTGTACAGACAGTATGCATGGGATTAGCTG 10192141 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| || | ||| |||||||||||||||||||||||||||||||| Sbjct 10192142 CTTCAATGGGATCTTTTCTTTTGGCAGGAGGAGAAATTACCAAACGTCTAGCATTCCC 10192199 >seq1 Length=107035537 Score = 127 bits (140), Expect = 8e-26 Identities = 99/118 (84%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||| | ||| | | | ||||||||| | |||||||| | Sbjct 26924320 TTTATGATACTATGCAATTTGTACGACCCGCTGTACAGACAGTATGCATGGGATTAGCTG 26924261 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| || | ||| |||||||||||||||||||||||||||||||| Sbjct 26924260 CTTCAATGGGATCTTTTCTTTTGGCAGGAGGAGAAATTACCAAACGTCTAGCATTCCC 26924203 Score = 127 bits (140), Expect = 8e-26 Identities = 99/118 (84%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||| | ||| | | | ||||||||| | |||||||| | Sbjct 80857675 TTTATGATACTATGCAATTTGTACGACCCGCTGTACAGACAGTATGCATGGGATTAGCTG 80857734 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| || | ||| |||||||||||||||||||||||||||||||| Sbjct 80857735 CTTCAATGGGATCTTTTCTTTTGGCAGGAGGAGAAATTACCAAACGTCTAGCATTCCC 80857792 >seq9 Length=120672674 Score = 125 bits (138), Expect = 3e-25 Identities = 99/118 (84%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||| | ||| | | | ||||||||| | |||||||| | Sbjct 105612156 TTTATGATACTATGCAATTTGTACAACCCGCTGTACAGACAGTATGCATGGGATTAGCTG 105612097 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| || | ||| |||||||||||||||||||||||||||||||| Sbjct 105612096 CTTCAATGGGATCTTTTTT--TGGCAGGAGGAGAAATTACCAAACGTCTAGCATTCCC 105612041 Score = 98.7 bits (108), Expect = 4e-17 Identities = 92/116 (79%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| || | | | | | || |||||||||| | |||||||| | Sbjct 119726071 TTTATGATACTATGCAATTTATACGATCCGTTATATATACAGTATGCATGGGATTAGCTG 119726130 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTC 117 || ||||| |||| || | ||| |||||||||||||||||||||||| ||||| Sbjct 119726131 TTTTAATGG-ATCTTTTCTTTTGGCAGGAGGAGAAATTACCAAACGTCTAACATTC 119726185 >seq7 Length=79126724 Score = 116 bits (128), Expect = 1e-22 Identities = 94/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 6 TGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTTC 65 ||||||| ||||| |||| | ||| | | | ||||||||| | |||||||| ||||| Sbjct 13532225 TGATACTGTGCAATTTGTACGACCCGCTGTACAGACAGTATGCATGGGATTAGCTGCTTC 13532166 Query 66 AATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||| || | ||| |||||||||||||||||||||||||||||||| Sbjct 13532165 AATGGGATCTTTTCTTTTGGCAGGAGGAGAAATTACCAAACGTCTAGCATTCCC 13532112 >seq10 Length=109463236 Score = 114 bits (126), Expect = 5e-22 Identities = 97/118 (82%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||| | ||| | | ||||||||| | |||||||| | Sbjct 97366507 TTTATGATACTATGCAATTTGTACGACCCACTGTACA-ACAGTATGCATGGGATTAGCTG 97366449 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||| ||||| || | ||| |||||||||||||||||||||||||||||||| Sbjct 97366448 CTTCAATGAGATCTTTTCTTTTGGCAGGAGGAGAAATTACCAAACGTCTAGCATTCCC 97366391 Score = 80.6 bits (88), Expect = 1e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 58 GCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTC 117 || ||||||||||||||| || | ||| |||||||||||||||||||||||||||||| Sbjct 97368528 GCTGCTTCAATGGGATCTTTTCTTTTGGCAGGAGGAGAAATTACCAAACGTCTAGCATTC 97368469 Query 118 CC 119 || Sbjct 97368468 CC 97368467 >seq5 Length=110037037 Score = 109 bits (120), Expect = 2e-20 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||| | ||| || || ||||||||| | |||||||| | Sbjct 28169742 TTTATGATACTATGCAATTTGTACAACCCATTATACGGACAGTATGCATTGGATTAGCTG 28169801 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATT 116 || ||||| |||| || | ||| |||||||||||||||||||||||||||| Sbjct 28169802 TTTTAATGGAATCTTTTCTTTTGGCAAGAGGAGAAATTACCAAACGTCTAGCATT 28169856 >seq4 Length=123556382 Score = 100 bits (110), Expect = 1e-17 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 40 ACAGTATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATT 99 ||||||||| | |||||||| ||||||||||||||| || | ||| |||||||||||| Sbjct 108925246 ACAGTATGCATGGGATTAGCTGCTTCAATGGGATCTTTTCTTTTGGCAGGAGGAGAAATT 108925305 Query 100 ACCAAACGTCTAGCATTCCC 119 |||||| ||||||||||||| Sbjct 108925306 ACCAAATGTCTAGCATTCCC 108925325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19046086061760