Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20ipaensis_20[refseq_20GCF_5F000816755.2_202017-04-25] 548 sequences; 1,353,504,219 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq4 104 1e-18 seq7 102 5e-18 seq1 102 5e-18 seq10 95.1 7e-16 >seq4 Length=133615181 Score = 104 bits (114), Expect = 1e-18 Identities = 70/76 (92%), Gaps = 2/76 (3%) Strand=Plus/Minus Query 8840 TTGTTGCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGT 8899 ||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 41362237 TTGATGCCTGCGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGT 41362178 Query 8900 TGCACG-ATT-GCTCT 8913 |||||| ||| ||||| Sbjct 41362177 TGCACGTATTAGCTCT 41362162 >seq7 Length=126351151 Score = 102 bits (112), Expect = 5e-18 Identities = 63/65 (97%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 48077874 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 48077815 Query 8909 GCTCT 8913 ||||| Sbjct 48077814 GCTCT 48077810 Score = 102 bits (112), Expect = 5e-18 Identities = 63/65 (97%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 48095254 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 48095195 Query 8909 GCTCT 8913 ||||| Sbjct 48095194 GCTCT 48095190 Score = 102 bits (112), Expect = 5e-18 Identities = 63/65 (97%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 50662789 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 50662730 Query 8909 GCTCT 8913 ||||| Sbjct 50662729 GCTCT 50662725 Score = 102 bits (112), Expect = 5e-18 Identities = 63/65 (97%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 54560646 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 54560587 Query 8909 GCTCT 8913 ||||| Sbjct 54560586 GCTCT 54560582 Score = 102 bits (112), Expect = 5e-18 Identities = 63/65 (97%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 54696560 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 54696501 Query 8909 GCTCT 8913 ||||| Sbjct 54696500 GCTCT 54696496 Score = 102 bits (112), Expect = 5e-18 Identities = 63/65 (97%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 54700705 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 54700646 Query 8909 GCTCT 8913 ||||| Sbjct 54700645 GCTCT 54700641 Score = 96.9 bits (106), Expect = 2e-16 Identities = 62/65 (95%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 50621119 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGGCGGGGTTTGTTGCACGTATTA 50621178 Query 8909 GCTCT 8913 ||||| Sbjct 50621179 GCTCT 50621183 Score = 96.9 bits (106), Expect = 2e-16 Identities = 62/65 (95%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 50652344 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGATTTGTTGCACGTATTA 50652403 Query 8909 GCTCT 8913 ||||| Sbjct 50652404 GCTCT 50652408 Score = 96.9 bits (106), Expect = 2e-16 Identities = 62/65 (95%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 50728153 GTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 50728094 Query 8909 GCTCT 8913 ||||| Sbjct 50728093 GCTCT 50728089 Score = 96.9 bits (106), Expect = 2e-16 Identities = 62/65 (95%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 54573186 GTTGACCTTTTATCTAATAAATGCCTCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 54573127 Query 8909 GCTCT 8913 ||||| Sbjct 54573126 GCTCT 54573122 Score = 96.9 bits (106), Expect = 2e-16 Identities = 62/65 (95%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 54699728 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCAGGGTTTGTTGCACGTATTG 54699669 Query 8909 GCTCT 8913 ||||| Sbjct 54699668 GCTCT 54699664 Score = 95.1 bits (104), Expect = 7e-16 Identities = 61/64 (95%), Gaps = 2/64 (3%) Strand=Plus/Minus Query 8852 TTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-G 8909 ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | Sbjct 50686422 TTGACCTTTTATCTAATAAATGCATCCCTTCTAGAAGTCGGGGTTTGTTGCACGTATTAG 50686363 Query 8910 CTCT 8913 |||| Sbjct 50686362 CTCT 50686359 Score = 93.3 bits (102), Expect = 2e-15 Identities = 61/65 (94%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 ||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 54581317 GTTGAGCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCAGGGTTTGTTGCACGTATTG 54581258 Query 8909 GCTCT 8913 ||||| Sbjct 54581257 GCTCT 54581253 >seq1 Length=137414913 Score = 102 bits (112), Expect = 5e-18 Identities = 63/65 (97%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 62634357 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 62634298 Query 8909 GCTCT 8913 ||||| Sbjct 62634297 GCTCT 62634293 Score = 93.3 bits (102), Expect = 2e-15 Identities = 61/65 (94%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 ||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 80812579 GTTGAGCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCAGGGTTTGTTGCACGTATTG 80812520 Query 8909 GCTCT 8913 ||||| Sbjct 80812519 GCTCT 80812515 >seq10 Length=136175642 Score = 95.1 bits (104), Expect = 7e-16 Identities = 54/55 (98%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 135857014 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGTTTTGTTGCACG 135857068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28406224874544