Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq395693 159 1e-35 seq202314 125 3e-25 seq98250 118 4e-23 seq39933 105 3e-19 seq98016 100 1e-17 seq160399 80.6 1e-11 seq25296 78.8 4e-11 >seq395693 Length=58139 Score = 159 bits (176), Expect = 1e-35 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||| | |||||| || | ||||||||| | |||||||||| Sbjct 13606 TTTATGATACTATGCAATTTGTACAACCAGACATACAAACAGTATGCATGGGATTAGCCG 13665 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||| Sbjct 13666 CTTCAATGGGATCTTTTATTCTGGTCGGAGGAGCAATTACCAAACGTCTAGCATTCCC 13723 >seq202314 Length=4307 Score = 125 bits (138), Expect = 3e-25 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||||||| || |||||| |||| | || | |||| ||| | |||||||||| Sbjct 1224 TTTATGATACTATGTAATTTGTGCAACCAAACATACAAACAGAATGTATGGGATTAGCCG 1165 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCC 118 ||| |||||||||| |||| |||||| ||| | ||||||||||||||||||||||| Sbjct 1164 CTTTAATGGGATCTTTTATTCTGGTCCAAGGCGCAATTACCAAACGTCTAGCATTCC 1108 >seq98250 Length=6752 Score = 118 bits (130), Expect = 4e-23 Identities = 97/116 (84%), Gaps = 4/116 (3%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||| |||| |||||||| ||||| |||||| || | ||||||||| |||||||| | | Sbjct 2670 TTTTTGATGCTATGCAA--TGTGCAACCAGACATACAAACAGTATGCATAGGATTAACTG 2613 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTC 117 |||||||||||||| |||| || || ||||||||||||| || |||||||||||| Sbjct 2612 CTTCAATGGGATCTTTTATTCTAGTTGGAGGAGAAATTA--AAGCGTCTAGCATTC 2559 >seq39933 Length=2503 Score = 105 bits (116), Expect = 3e-19 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 4 TATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCT 63 ||||||||||||||| ||||| |||||| || | ||| |||| | | | |||| ||| Sbjct 2247 TATGATACTATGCAATTTGTGTAACCAGACATGCAAACAATATGTATGGAACTAGCAGCT 2188 Query 64 TCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||| ||||| |||| ||| || || ||||||||| ||||| ||||||||| || Sbjct 2187 TCAATGAGATCTTTTATTCTGATCCGATGAGAAATTATCAAACATCTAGCATTTCC 2132 >seq98016 Length=2610 Score = 100 bits (110), Expect = 1e-17 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 4 TATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCT 63 ||||||||||| || ||||| |||| | | ||||||| | | |||||| ||| Sbjct 2057 TATGATACTATATAATTTGTGAAGTCAGACTTACAAACAGTATATATGGAATTAGCTGCT 2116 Query 64 TCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATT 116 | |||||||||| |||| ||||| ||||||||||||||||||||||||| ||| Sbjct 2117 TTAATGGGATCTTTTATTCTGGTAGGAGGAGAAATTACCAAACGTCTAGTATT 2169 >seq160399 Length=1322 Score = 80.6 bits (88), Expect = 1e-11 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||| ||||||||||| |||| | |||||| || | ||||||||| | |||||||||| Sbjct 567 TTTATTATACTATGCAATTTGTCCAACCAGACATACAAACAGTATGCATGGGATTAGCCG 508 Query 62 CTTCAATGG 70 ||||||||| Sbjct 507 CTTCAATGG 499 >seq25296 Length=2265 Score = 78.8 bits (86), Expect = 4e-11 Identities = 57/66 (86%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 50 TAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTC 109 || ||||||| |||||| |||||||| || | |||| | |||||||||||||||||| || Sbjct 1317 TAAGATTAGCTGCTTCATTGGGATCTTTTCTTCTGGCCAGAGGAGAAATTACCAAACATC 1376 Query 110 TAGCAT 115 |||||| Sbjct 1377 TAGCAT 1382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18963900072000