Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq220963 104 9e-19 seq185287 87.8 7e-14 >seq220963 Length=5636 Score = 104 bits (114), Expect = 9e-19 Identities = 93/118 (79%), Gaps = 14/118 (12%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||| | |||||| ||| ||||| || ||||||| Sbjct 1981 TTTATGATACTATGCAATTTGTACGACCAGATGTCCATACAG--------GGGTTAGCCG 2032 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| || || ||| ||| |||||||||||||||||||||||| Sbjct 2033 CTTCAATGGGATCTTTTCTCTTGGCCGG------AATTACCAAACGTCTAGCATTCCC 2084 >seq185287 Length=352 Score = 87.8 bits (96), Expect = 7e-14 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| || | |||||| ||| |||| | || | || || || Sbjct 217 TTTATGATACTATGCAATTTATAAAACCAGATGTCCATACAATTGGCATGGGGACAGTCG 276 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||| |||| | ||| ||| |||| ||| | ||| ||||||| | |||||||| Sbjct 277 CTTCAATGGCATCTTTGATCTTGGCCGGATGAGCAGTTAGCAAACGTATGGCATTCCC 334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19000183166400