Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq126040 136 2e-28 seq94388 136 2e-28 seq109911 132 2e-27 seq94397 132 2e-27 >seq126040 Length=461 Score = 136 bits (150), Expect = 2e-28 Identities = 101/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | ||| ||||| | ||||| |||| Sbjct 225 TTTATGATACTATGCAATTTGTGCGACCAGATGTACAGACAATATGCATGGGATTGGCCG 284 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 | |||||||| ||| || |||||||||| |||||||||||||||||| |||||||||| Sbjct 285 CCTCAATGGGGTCTTTTCTCCTGGTCGGGGGAGAAATTACCAAACGTTTAGCATTCCC 342 >seq94388 Length=8818 Score = 136 bits (150), Expect = 2e-28 Identities = 101/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | ||| ||||| | ||||| |||| Sbjct 1962 TTTATGATACTATGCAATTTGTGCGACCAGATGTACAGACAATATGCATGGGATTGGCCG 2021 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 | |||||||| ||| || |||||||||| |||||||||||||||||| |||||||||| Sbjct 2022 CCTCAATGGGGTCTTTTCTCCTGGTCGGGGGAGAAATTACCAAACGTTTAGCATTCCC 2079 >seq109911 Length=2275 Score = 132 bits (146), Expect = 2e-27 Identities = 100/118 (85%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | ||| ||||| | ||||| |||| Sbjct 623 TTTATGATACTATGCAATTTGTGCGACCAGATGTACAGACAATATGCATGGGATTGGCCG 564 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 | |||||||| | | || |||||||||| |||||||||||||||||| |||||||||| Sbjct 563 CCTCAATGGGGTTTTTTCTCCTGGTCGGGGGAGAAATTACCAAACGTTTAGCATTCCC 506 >seq94397 Length=2355 Score = 132 bits (146), Expect = 2e-27 Identities = 100/118 (85%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | ||| ||||| | ||||| |||| Sbjct 422 TTTATGATACTATGCAATTTGTGCGACCAGATGTACAGACAATATGCATGGGATTGGCCG 481 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 | |||||||| ||| || |||||||||| |||||||||||||||||| ||||||| || Sbjct 482 CCTCAATGGGGTCTTTTCTCCTGGTCGGGGGAGAAATTACCAAACGTTTAGCATTNCC 539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19020122098560