Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq86136 95.1 7e-16 seq94462 91.5 8e-15 seq103845 87.8 1e-13 seq94390 86.0 4e-13 >seq86136 Length=1723 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1633 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGGTGCAC 1692 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 1693 GTATTAGCTCT 1703 >seq94462 Length=1518 Score = 91.5 bits (100), Expect = 8e-15 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct 1412 GCCCGCGTCGACCTTTTNTCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGGTGCAC 1471 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 1472 GTATTAGCTCT 1482 >seq103845 Length=957 Score = 87.8 bits (96), Expect = 1e-13 Identities = 65/72 (90%), Gaps = 3/72 (4%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAAT-AAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA 8903 || || || ||||||||||||||| |||||||||||||||||||||||||||||| |||| Sbjct 804 GCCCGCGTCGACCTTTTATCTAATNAAATGCATCCCTTCCAGAAGTCGGGGTTTGGTGCA 863 Query 8904 CG-ATT-GCTCT 8913 || ||| ||||| Sbjct 864 CGTATTAGCTCT 875 >seq94390 Length=6339 Score = 86.0 bits (94), Expect = 4e-13 Identities = 65/73 (89%), Gaps = 4/73 (5%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACC--TTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGC 8902 || || || |||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 5676 GCCCGCGTCGACCNNTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGGTGC 5617 Query 8903 ACG-ATT-GCTCT 8913 ||| ||| ||||| Sbjct 5616 ACGTATTAGCTCT 5604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28366088548776