Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq145 136 2e-28 seq268 127 8e-26 seq159 127 8e-26 seq127 127 8e-26 seq1 118 4e-23 seq22 116 1e-22 seq6862 96.9 1e-16 >seq145 Length=44152522 Score = 136 bits (150), Expect = 2e-28 Identities = 101/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||| |||||| |||||| |||||| | | |||| |||| | || || || | Sbjct 25910575 TTTATGATACCATGCAATTTGTGCGACCAGATGTACATACAATATGTATGGGGTTGGCTG 25910634 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||| Sbjct 25910635 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAAAAATTACCAAACGTTTAGCATTCCC 25910692 >seq268 Length=327769 Score = 127 bits (140), Expect = 8e-26 Identities = 99/118 (84%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||| || ||| |||||| |||||| | | |||| |||| | || || || | Sbjct 288661 TTTATGATACCATACAATTTGTGCGACCAGATGTACATACAATATGTATTGGGTTGGCTG 288720 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||| ||||| |||||||||||| ||||||||||||||||||| |||||||||| Sbjct 288721 CTTCAATGAGATCTTTTATCCTGGTCGAAGGAGAAATTACCAAACGTTTAGCATTCCC 288778 >seq159 Length=432747 Score = 127 bits (140), Expect = 8e-26 Identities = 99/118 (84%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||| |||||| |||||| |||||| || | ||| |||| | || || || | Sbjct 374402 TTTATGATACCATGCAATTTGTGCGACCAGATATACATACTATATGTATGGGGTTGGCTG 374343 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||||||||||| |||||||||||| |||| | |||||||||| Sbjct 374342 CTTCAATGGGATCTTTTATCCTGGTCGTAGGAGAAATTACTAAACATGTAGCATTCCC 374285 Score = 127 bits (140), Expect = 8e-26 Identities = 99/118 (84%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 || ||||||| ||| ||||| ||| |||| | | | |||| |||| | || || || | Sbjct 404569 TTAATGATACCATGAAAATTATGCGACCAAATGTACATACAATATGTATGGGGTTGGCTG 404510 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 404509 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTTTAGCATTCCC 404452 >seq127 Length=60962716 Score = 127 bits (140), Expect = 8e-26 Identities = 99/118 (84%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||| |||||| |||||| |||| | | | |||| |||| | || || || | Sbjct 11556407 TTTATGATACCATGCAATTTGTGCGACCAAATGTACATACAATATGTATGGGGTTGGCTG 11556466 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||| | ||||| |||||||||||||||||||||||||| |||||||||| Sbjct 11556467 CTTCAATGGGATATTTTATCTTGGTCGGAGGAGAAATTACCAAACGTTTAGCATTCCC 11556524 >seq1 Length=34941034 Score = 118 bits (130), Expect = 4e-23 Identities = 97/118 (82%), Gaps = 5/118 (4%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||| |||||| |||||| |||||| | | |||| |||| | | ||||| | Sbjct 11661099 TTTATGATACCATGCAATTTGTGCAACCAGATGTACATACAATATGTATGAGGTTAGCTG 11661158 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||| | |||||||||||||||||||||||||||||||| |||||||||| Sbjct 11661159 CTTCAATG-----TTTTATCCTGGTCGGAGGAGAAATTACCAAACGTTTAGCATTCCC 11661211 Score = 98.7 bits (108), Expect = 4e-17 Identities = 94/120 (78%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAAT---TGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAG 58 |||||||||| |||||| | ||||| || ||| | | |||| |||| | || || | Sbjct 28566764 TTTATGATACCATGCAATTATTTGTGCGACTAGATGTACATACAATATGTTTGGGGTTGG 28566823 Query 59 CCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCC 118 |||||||| ||||| ||||| | |||||||||||||||||||||| | ||||||||| Sbjct 28566824 TTGCTTCAATAGGATCATTTATCTTAGTCGGAGGAGAAATTACCAAACATTTAGCATTCC 28566883 >seq22 Length=40393389 Score = 116 bits (128), Expect = 1e-22 Identities = 87/102 (85%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 18 AATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTTCAATGGGATCTGT 77 || ||||| |||||| | | |||| |||| ||| || || ||||||||||||||| | Sbjct 254809 AAATGTGCGACCAGATGTACATACAATATGTACAGGGTTGGCTGCTTCAATGGGATCTTT 254868 Query 78 TATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||||||||||||||||||||||||| |||||||||| Sbjct 254869 TATCCTGGTCGGAGGAGAAATTACCAAACGTTTAGCATTCCC 254910 >seq6862 Length=863 Score = 96.9 bits (106), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 3/119 (3%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||| |||||| |||||| |||||| | | |||| ||| | || || || | Sbjct 164 TTTATGATACCATGCAATTTGTGCGACCAGATGTACATACAATATATATGGGGTTGGCTG 223 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTAC-CAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||| ||| ||||| ||||| ||||| |||||||||| Sbjct 224 CTTCAATGGGATCTTTTATCCTCATCGAAGGAG--ATTACTTTAACGTTTAGCATTCCC 280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19038015953280