Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq57 104 1e-18 seq22 104 1e-18 seq1486 98.7 6e-17 seq748 98.7 6e-17 seq103 93.3 2e-15 seq127 87.8 1e-13 seq344 78.8 5e-11 >seq57 Length=33024243 Score = 104 bits (114), Expect = 1e-18 Identities = 67/71 (94%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8399555 GCCCGCGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8399496 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 8399495 GTATTAGCTCT 8399485 >seq22 Length=40393389 Score = 104 bits (114), Expect = 1e-18 Identities = 67/71 (94%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 33417514 GCCCGCGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 33417573 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 33417574 GTATTAGCTCT 33417584 >seq1486 Length=6015 Score = 98.7 bits (108), Expect = 6e-17 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA 8903 || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 GCCCGCGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA 118 >seq748 Length=11103 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 197 GCCCGCGTTGACCTTTTATCTAGTAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 138 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 137 GTATTAGCTCT 127 >seq103 Length=1049538 Score = 93.3 bits (102), Expect = 2e-15 Identities = 61/65 (94%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 |||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||| Sbjct 761004 GTTGACCTTTTATCTAATAAATGCATCCCTTCAAGAAGTCGAGGTTTGTTGCACGTATTA 760945 Query 8909 GCTCT 8913 ||||| Sbjct 760944 GCTCT 760940 >seq127 Length=60962716 Score = 87.8 bits (96), Expect = 1e-13 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 8850 TGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 ||||||||||||||||||||||||||||||||| |||||| | ||||||||||||| Sbjct 58778702 TGTTGACCTTTTATCTAATAAATGCATCCCTTCTAGAAGTTGAGGTTTGTTGCACG 58778647 >seq344 Length=88605 Score = 78.8 bits (86), Expect = 5e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 || |||||| |||||||||||||||| ||||||||| |||| ||||||||||||||| Sbjct 77975 CGCGTTGACATTTTATCTAATAAATGTGTCCCTTCCAAAAGTTGGGGTTTGTTGCACG 78032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28393538505288