Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq22371 123 9e-25 seq485 107 7e-20 seq29984 78.8 4e-11 >seq22371 Length=78984 Score = 123 bits (136), Expect = 9e-25 Identities = 93/108 (86%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 7 GATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTTCA 66 |||||||| ||| |||| | |||||| | | ||| ||||| | ||||||||||||||| Sbjct 2453 GATACTATACAATTTGTACGACCAGATGTACAGACAATATGCTTGGGATTAGCCGCTTCA 2394 Query 67 ATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACC-AAACGTCTAGC 113 ||||||||| |||| ||||||||||||||||||||| ||||||||||| Sbjct 2393 ATGGGATCTTTTATTCTGGTCGGAGGAGAAATTACCAAAACGTCTAGC 2346 >seq485 Length=156947 Score = 107 bits (118), Expect = 7e-20 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 41 CAGTATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTA 100 || ||||| | |||||||| ||||||||||||||| || | |||||||||||||||||| Sbjct 18876 CAATATGCATGGGATTAGCTGCTTCAATGGGATCTTTTGTTTTGGTCGGAGGAGAAATTA 18817 Query 101 CCAAACGTCTAGCATTCCC 119 ||||||||||||||||||| Sbjct 18816 CCAAACGTCTAGCATTCCC 18798 >seq29984 Length=22394 Score = 78.8 bits (86), Expect = 4e-11 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 52 GGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTA 111 ||| |||| ||||||||||||||| |||| || | ||||||||||||| | |||| ||| Sbjct 4064 GGACTAGCTGCTTCAATGGGATCTTTTATTTTGATGGGAGGAGAAATTATCGAACGCCTA 4005 Query 112 GCATTCCC 119 |||||||| Sbjct 4004 GCATTCCC 3997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18931425067200