Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq1366 98.7 6e-17 seq329 89.7 3e-14 seq1328 84.2 1e-12 >seq1366 Length=583463 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 381055 GCCCGTTTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 381114 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 381115 GTATTAGCTCT 381125 >seq329 Length=151530 Score = 89.7 bits (98), Expect = 3e-14 Identities = 59/63 (94%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 8853 TGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GC 8910 ||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||| || Sbjct 6931 TGACCTTTTATCTAATAAATGCATCTCTTCCAGAAGTTGGGGTTTGTTGCACGTATTAGC 6990 Query 8911 TCT 8913 ||| Sbjct 6991 TCT 6993 >seq1328 Length=1576597 Score = 84.2 bits (92), Expect = 1e-12 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||| |||| |||||||||||||| ||||||||||||| Sbjct 1563883 GCCCGCGTCGACCTTTTATCTAATAAGTGCACCCCTTCCAGAAGTCAGGGTTTGTTGCAC 1563824 Query 8905 G 8905 | Sbjct 1563823 G 1563823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28405778752032