Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq9 172 2e-39 seq1375 132 2e-27 seq44 132 2e-27 seq18 132 2e-27 seq15 132 2e-27 seq13 132 2e-27 seq4 132 2e-27 seq12 123 9e-25 seq239 100 1e-17 seq8 100 1e-17 seq7 100 1e-17 seq99 93.3 2e-15 >seq9 Length=46179939 Score = 172 bits (190), Expect = 2e-39 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 42290168 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 42290227 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 42290228 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 42290285 >seq1375 Length=152860 Score = 132 bits (146), Expect = 2e-27 Identities = 100/118 (85%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || | | ||| ||||| | ||||| |||| Sbjct 69581 TTTATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCG 69522 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||| | ||| ||||||| |||||||||||||||||||||||| |||||||||| Sbjct 69521 CTTCAATAGCATCCTTTATCCTAGTCGGAGGAGAAATTACCAAACGTATAGCATTCCC 69464 >seq44 Length=918520 Score = 132 bits (146), Expect = 2e-27 Identities = 100/118 (85%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || | | ||| ||||| | ||||| |||| Sbjct 548127 TTTATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCG 548186 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||| | ||| ||||||| |||||||||||||||||||||||| |||||||||| Sbjct 548187 CTTCAATAGCATCCTTTATCCTAGTCGGAGGAGAAATTACCAAACGTATAGCATTCCC 548244 >seq18 Length=36757632 Score = 132 bits (146), Expect = 2e-27 Identities = 100/118 (85%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || | | ||| ||||| | ||||| |||| Sbjct 7752160 TTTATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCG 7752219 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||| | ||| ||||||| |||||||||||||||||||||||| |||||||||| Sbjct 7752220 CTTCAATAGCATCCTTTATCCTAGTCGGAGGAGAAATTACCAAACGTATAGCATTCCC 7752277 >seq15 Length=39600445 Score = 132 bits (146), Expect = 2e-27 Identities = 100/118 (85%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || | | ||| ||||| | ||||| |||| Sbjct 38535271 TTTATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCG 38535212 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||| | ||| ||||||| |||||||||||||||||||||||| |||||||||| Sbjct 38535211 CTTCAATAGCATCCTTTATCCTAGTCGGAGGAGAAATTACCAAACGTATAGCATTCCC 38535154 Score = 132 bits (146), Expect = 2e-27 Identities = 100/118 (85%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || | | ||| ||||| | ||||| |||| Sbjct 38556342 TTTATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCG 38556283 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||| | ||| ||||||| |||||||||||||||||||||||| |||||||||| Sbjct 38556282 CTTCAATAGCATCCTTTATCCTAGTCGGAGGAGAAATTACCAAACGTATAGCATTCCC 38556225 Score = 96.9 bits (106), Expect = 1e-16 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 22 GTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATC 81 |||| ||| || | | ||| ||||| | ||||| ||||||||||| | ||| ||||| Sbjct 28452731 GTGCGACCCGATGTACAGACAATATGCATGGGATTTGCCGCTTCAATAGCATCCTTTATC 28452790 Query 82 CTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 || ||||||||| |||||||||||||| |||||||||| Sbjct 28452791 CTAGTCGGAGGATAAATTACCAAACGTTTAGCATTCCC 28452828 >seq13 Length=54295181 Score = 132 bits (146), Expect = 2e-27 Identities = 100/118 (85%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || | | ||| ||||| | ||||| |||| Sbjct 36451368 TTTATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCG 36451309 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||| | ||| ||||||| |||||||||||||||||||||||| |||||||||| Sbjct 36451308 CTTCAATAGCATCCTTTATCCTAGTCGGAGGAGAAATTACCAAACGTATAGCATTCCC 36451251 Score = 100 bits (110), Expect = 1e-17 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 22 GTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATC 81 |||| ||| || | | ||| ||||| | ||||| ||||||||||| | ||| ||||| Sbjct 52219216 GTGCGACCCGATGTACAGACAATATGCATGGGATTTGCCGCTTCAATAGCATCCTTTATC 52219275 Query 82 CTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 || |||||||||||||||||||||||| |||||||||| Sbjct 52219276 CTAGTCGGAGGAGAAATTACCAAACGTGTAGCATTCCC 52219313 >seq4 Length=41855496 Score = 132 bits (146), Expect = 2e-27 Identities = 100/118 (85%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || | | ||| ||||| | ||||| |||| Sbjct 5663745 TTTATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCG 5663804 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||| | ||| ||||||| |||||||||||||||||||||||| |||||||||| Sbjct 5663805 CTTCAATAGCATCCTTTATCCTAGTCGGAGGAGAAATTACCAAACGTATAGCATTCCC 5663862 >seq12 Length=46391361 Score = 123 bits (136), Expect = 9e-25 Identities = 98/118 (83%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || | | ||| ||||| | ||||| ||| Sbjct 6197851 TTTATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGATTGTCCG 6197910 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||| | ||| ||||||| |||||||||| ||||||||||||| |||||||||| Sbjct 6197911 CTTCAATAGCATCCTTTATCCTAGTCGGAGGAGTAATTACCAAACGTATAGCATTCCC 6197968 >seq239 Length=219431 Score = 100 bits (110), Expect = 1e-17 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 22 GTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATC 81 |||| ||| || | | ||| ||||| | ||||| ||||||||||| | ||| ||||| Sbjct 110865 GTGCGACCCGATGTACAGACAATATGCATGGGATTTGCCGCTTCAATAGCATCATTTATC 110924 Query 82 CTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 || |||||||||||||||||||||||| |||||||||| Sbjct 110925 CTAGTCGGAGGAGAAATTACCAAACGTATAGCATTCCC 110962 >seq8 Length=24646021 Score = 100 bits (110), Expect = 1e-17 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 22 GTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATC 81 |||| ||| || | | ||| ||||| | ||||| ||||||||||| | ||| ||||| Sbjct 17929927 GTGCGACCCGATGTACAGACAATATGCATGGGATTTGCCGCTTCAATAGCATCCTTTATC 17929868 Query 82 CTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 || |||||||||||||||||||||||| |||||||||| Sbjct 17929867 CTAGTCGGAGGAGAAATTACCAAACGTGTAGCATTCCC 17929830 >seq7 Length=43258566 Score = 100 bits (110), Expect = 1e-17 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 22 GTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATC 81 |||| ||| || | | ||| ||||| | ||||| ||||||||||| | ||| ||||| Sbjct 1828688 GTGCGACCCGATGTACAGACAATATGCATGGGATTTGCCGCTTCAATAGCATCCTTTATC 1828747 Query 82 CTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 || |||||||||||||||||||||||| |||||||||| Sbjct 1828748 CTAGTCGGAGGAGAAATTACCAAACGTGTAGCATTCCC 1828785 >seq99 Length=576559 Score = 93.3 bits (102), Expect = 2e-15 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 44 TATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCA 103 ||||| | ||||| |||||| |||| | ||| ||||||| ||||||||||||||||||| Sbjct 93703 TATGCATGGGATTTGCCGCTACAATAGCATCCTTTATCCTAGTCGGAGGAGAAATTACCA 93644 Query 104 AACGTCTAGCATTCCC 119 ||||| |||||||||| Sbjct 93643 AACGTGTAGCATTCCC 93628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19046113351680