Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq2 100 2e-17 seq82 98.7 6e-17 seq8 96.9 2e-16 >seq2 Length=44367670 Score = 100 bits (110), Expect = 2e-17 Identities = 62/64 (97%), Gaps = 2/64 (3%) Strand=Plus/Minus Query 8852 TTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-G 8909 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 18596028 TTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAG 18595969 Query 8910 CTCT 8913 |||| Sbjct 18595968 CTCT 18595965 Score = 96.9 bits (106), Expect = 2e-16 Identities = 62/65 (95%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 18595931 GTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 18595872 Query 8909 GCTCT 8913 ||||| Sbjct 18595871 GCTCT 18595867 >seq82 Length=47206 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 21060 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 21001 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 21000 GTATTAGCTCT 20990 >seq8 Length=44809562 Score = 96.9 bits (106), Expect = 2e-16 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 41484075 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 41484016 Query 8905 G 8905 | Sbjct 41484015 G 41484015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28405586689260