Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq3229 102 5e-18 seq2406 102 5e-18 seq2883 96.9 2e-16 seq2238 95.1 7e-16 seq4466 89.7 3e-14 seq3472 89.7 3e-14 seq4981 82.4 4e-12 >seq3229 Length=12013 Score = 102 bits (112), Expect = 5e-18 Identities = 63/65 (97%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 6307 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 6248 Query 8909 GCTCT 8913 ||||| Sbjct 6247 GCTCT 6243 >seq2406 Length=23699 Score = 102 bits (112), Expect = 5e-18 Identities = 63/65 (97%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1930 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 1989 Query 8909 GCTCT 8913 ||||| Sbjct 1990 GCTCT 1994 Score = 102 bits (112), Expect = 5e-18 Identities = 63/65 (97%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 4249 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 4308 Query 8909 GCTCT 8913 ||||| Sbjct 4309 GCTCT 4313 >seq2883 Length=16522 Score = 96.9 bits (106), Expect = 2e-16 Identities = 62/65 (95%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 11632 GTTGACCTTTTATCTAATAAATGCATCCCTTCTAGAAGTCGGGGTTTGTTGCACGTATTA 11573 Query 8909 GCTCT 8913 ||||| Sbjct 11572 GCTCT 11568 >seq2238 Length=26557 Score = 95.1 bits (104), Expect = 7e-16 Identities = 61/64 (95%), Gaps = 2/64 (3%) Strand=Plus/Minus Query 8852 TTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-G 8909 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | Sbjct 25424 TTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGAGGTTTGTTGCACGTATTAG 25365 Query 8910 CTCT 8913 |||| Sbjct 25364 CTCT 25361 >seq4466 Length=5592 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||| | |||||||||||||||||||||||||| ||||| |||| |||||||||||||||| Sbjct 102 GCTTGCGTTGACCTTTTATCTAATAAATGCATACCTTCTAGAAATCGGGGTTTGTTGCAC 161 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 162 GTATTAGCTCT 172 >seq3472 Length=10196 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 7895 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCGCAAGTCGGGGTTTGTTGCAC 7836 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 7835 GTATTAGCTCT 7825 >seq4981 Length=4244 Score = 82.4 bits (90), Expect = 4e-12 Identities = 58/64 (91%), Gaps = 2/64 (3%) Strand=Plus/Plus Query 8852 TTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-G 8909 ||||||||||||||||||||||||||||||||| || || || ||||||||||| ||| | Sbjct 2878 TTGACCTTTTATCTAATAAATGCATCCCTTCCAAAATTCAGGTTTTGTTGCACGTATTAG 2937 Query 8910 CTCT 8913 |||| Sbjct 2938 CTCT 2941 Score = 82.4 bits (90), Expect = 4e-12 Identities = 58/64 (91%), Gaps = 2/64 (3%) Strand=Plus/Minus Query 8852 TTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-G 8909 ||||||||||||||||||||||||||||||||| || || || ||||||||||| ||| | Sbjct 4170 TTGACCTTTTATCTAATAAATGCATCCCTTCCAAAATTCAGGTTTTGTTGCACGTATTAG 4111 Query 8910 CTCT 8913 |||| Sbjct 4110 CTCT 4107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28394724117408