Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_000947.1 Length=9760 Score E Sequences producing significant alignments: (Bits) Value seq4616 268 6e-68 >seq4616 Length=1066 Score = 268 bits (296), Expect = 6e-68 Identities = 402/567 (71%), Gaps = 12/567 (2%) Strand=Plus/Minus Query 8965 TACAACCCAGAGCAAGTTGACTTGGCTAACACAAGGGCTACAAGGAAACAATTTGACACA 9024 ||||| || | ||| ||||| | ||||||| | || || ||||||||| | Sbjct 993 TACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATTCACAATTTGAGAAG 934 Query 9025 TGGTATGATGGAGTTAAACGAGATTACGAGTTGGATGACAGCTCAATGCAAATAATCCTG 9084 |||||||| ||||| | ||||| | | |||| | ||||||| | || || Sbjct 933 TGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAATGCAAGTGATGCTA 874 Query 9085 AATGGATTGATGGTTTGGTGCATTGAAAATGGCACTTCACCAAACATAAATGGAATGTGG 9144 ||||| |||||||||||||| || || ||||| || || ||| ||||| ||| | ||| Sbjct 873 AATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGG 814 Query 9145 GTCATGATGGACGGAGAAGAGCAAATTGAATATCCGATAAAACCATTAATAGATCACGCC 9204 || |||||||| || ||| ||| |||| ||||| || || || || || || || || Sbjct 813 GTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCT 754 Query 9205 AAACCCACATTTCGACAGATAATGGCTCATTTCAGTTATGTCGCTGAAGCATATATTGAA 9264 | || ||||| | || || |||||||| || ||| | | || |||||||| |||| Sbjct 753 ACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCG 694 Query 9265 AAGAGAAAT-CAGGAAAAAGCGTACATGCCACGCTATGGACTTCAGAGGAACCTGACAGA 9323 ||||||||| | | || ||||||||| || |||||| | |||| || |||| || Sbjct 693 AAGAGAAATGCTACTGAGAG-GTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGA 635 Query 9324 CATGAGCCTCGCTCGCTATGCGTTTGATTTTTACGAAGTAACATCAAAAACACCAGCGAG 9383 ||| ||||||||| | || || || || || || || || | || |||||||| | || Sbjct 634 CATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGATAG 575 Query 9384 AGCGCGCGAAGCTCATATCCAAATGAAAGCAGCAGCCCT----TAGAGGTGT-GCAAAAC 9438 || ||||||||||| || || ||||| || ||||| || | | || |||||| Sbjct 574 GGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAACACCAGTCGCAAAA- 516 Query 9439 AAGTTGTTTGGATTGGACGGAAATGTCAGCACAATGGAAGAAAACACGGAGAGACACACA 9498 ||||||| ||||||| | ||| || | | ||||||||||||||||||||||||| Sbjct 515 ----TGTTTGGTATGGACGGCAGTGTTAGTAACAAGGAAGAAAACACGGAGAGACACACA 460 Query 9499 GCTGAAGATGTGAACCGCAATATGCAC 9525 | |||||||| || | | |||||| Sbjct 459 GTGGAAGATGTCAATAGAGACATGCAC 433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31110581463104