Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_001445.1 Length=9741 Score E Sequences producing significant alignments: (Bits) Value seq4616 250 2e-62 >seq4616 Length=1066 Score = 250 bits (276), Expect = 2e-62 Identities = 377/526 (72%), Gaps = 20/526 (4%) Strand=Plus/Minus Query 8997 TGGTATGAAGGAGTTAAGCGAGACTATGATGTCACGGACGATGAAATGAGCATCATTTTA 9056 |||||||| ||||| | | || |||| | | || |||||||| | || || Sbjct 933 TGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAATGCAAGTGATGCTA 874 Query 9057 AATGGTCTTATGGTTTGGTGCATAGAGAATGGAACATCCCC-GA-ATATCAATGGAATGT 9114 |||||| | ||||||||||| || |||||||| ||||| || || ||||| ||| | | Sbjct 873 AATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATC--TGGTGTCT 816 Query 9115 GGGTGATGATGGATGGGGAAACACAAGTGGAGTATCCAATAAAGCCATTGTTGGATCATG 9174 |||| ||||||||||||||||| ||||| || |||||||| ||||| ||| | || |||| Sbjct 815 GGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATG 756 Query 9175 CGAAACCCACTTTTAGACAAATTATGGCACATTTCAGTAACGTGGCTGAAGCGTATATTG 9234 | | || | ||||| ||||||||||| || || ||||||| ||| ||||| || |||| Sbjct 755 CTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTG 696 Query 9235 AAAAACGAAAT--TATGAAAAAGCATACATGCCAAGGTATGGAATTCAGCGCAACCTGAC 9292 || ||||| || | | | |||||||| |||||||||| || | || |||| Sbjct 695 CGAAGAGAAATGCTACTGAGAGG--TACATGCCGCGGTATGGAATCAAGAGAAATTTGAC 638 Query 9293 AGACTACAGCCTCGCCAGATATGCCTTTGATTTTTACGAAATGACTTCAACGACACCCGT 9352 ||| |||||||| ||||| || || || || || || ||| ||| | ||||| | Sbjct 637 TGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGA 578 Query 9353 ACGGGCACGTGAAGCTCATATCCAAATGAAGGCAGCAGCATTGAGAAA----TGT-TCAA 9407 |||| || |||||||| || || |||||||| ||||| || |||| || ||| Sbjct 577 TAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAACACCAGTCGCAA 518 Query 9408 AATCGTTTATTTGGCTTGGATGGAAACG-TCGGAACACAAGAAGAGGACACAGAGAGACA 9466 || | ||||| |||| || | | | | |||| | ||||| |||| |||||||| Sbjct 517 AA-----TGTTTGGTATGGACGGCAGTGTTAGTAACA-AGGAAGAAAACACGGAGAGACA 464 Query 9467 CACCGCTGGTGATGTTAATCGCAACATGCACAACCTCCTCGGTATG 9512 ||| | | ||||| ||| | |||||||| ||||| |||||| Sbjct 463 CACAGTGGAAGATGTCAATAGAGACATGCACTCTCTCCTGGGTATG 418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31049793613680