Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_001517.1 Length=9640 Score E Sequences producing significant alignments: (Bits) Value seq4616 163 2e-36 >seq4616 Length=1066 Score = 163 bits (180), Expect = 2e-36 Identities = 358/533 (67%), Gaps = 10/533 (2%) Strand=Plus/Minus Query 8714 ATCAATCACTGAAAAGATGCGTATGCCTAAACAGAAGAGAAAGGGTGTTCTCAACTTGGC 8773 |||| | ||||| |||||| | | || | | ||| | ||| ||| || || || Sbjct 1066 ATCATTTACTGATAAGATGGTTCTACCGAGAATTAAGGGGAAGACTGTCCTTAATTTAAA 1007 Query 8774 TCATTTACTTGAATACAAACCAAGCCAAGTTGACATATCGAACACTCGTTCAACCCAGGC 8833 |||| | ||| | ||||| || ||| ||||||| || ||||||||| | || || | Sbjct 1006 TCATCTTCTTCAGTACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATTC 947 Query 8834 ACAATTTGACAATTGGTATTGTGAAGTTATGAAGGCATACGATCTACAAGAGGAGGCAAT 8893 ||||||||| || |||||| | ||| | ||| | || | || | || | | ||| Sbjct 946 ACAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAAT 887 Query 8894 GGGTACAGTGATG---AATGGCTTAATGGTTTGGTGCATTGAAAATGGCACGTCCCCAAA 8950 | ||||||| ||||| || ||||||||||| || || ||||| || || ||| | Sbjct 886 GCA---AGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGA 830 Query 8951 CATTAGTGGAACATGGACCATGATGGATGGAGACGAACAAGTGGAATTCCCATTAAAGCC 9010 ||| ||| ||| ||||||||||| || ||||| || | ||| | ||||| Sbjct 829 CATATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCC 770 Query 9011 CGTGATAGAGAATGCCAAGCCGACTTTTCGGCAAATAATGGCGCACTTTTCTGATGTGGC 9070 |||| ||| |||| | ||| | ||| ||||||| ||||| |||||| | | | ||| Sbjct 769 TTTGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGC 710 Query 9071 TGAGGCATATATAGAAATGCGCAATAAGCAA--GAACCATACATGCCACGATATGGTTTG 9128 || ||||| || | | | | ||| || | || |||||||| || ||||| | Sbjct 709 AGAAGCATACATTGCGAAGAGAAAT--GCTACTGAGAGGTACATGCCGCGGTATGGAATC 652 Query 9129 GTTCGAAATTTACGAGACATGGGTCTGGCTCGATACGCATTTGACTTCTATGAAGTCACA 9188 ||||||| ||||| | || ||| ||||||| || ||||||||||| || | Sbjct 651 AAGAGAAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAAT 592 Query 9189 TCACGTACGTCAACACGTGCTCGCGAAGCCCATATCCAAATGAAAGCAGCAGC 9241 || || | | ||||||||||| || || || ||||| || ||||| Sbjct 591 TCGAAAACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGC 539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30726658203584