Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_001555.1 Length=9494 Score E Sequences producing significant alignments: (Bits) Value seq4616 197 8e-47 >seq4616 Length=1066 Score = 197 bits (218), Expect = 8e-47 Identities = 398/588 (68%), Gaps = 12/588 (2%) Strand=Plus/Minus Query 8703 AACTTGAATCACCTTTTAGGATACAAGCCACAGCAAATTGATTTGTCAAATGCTCGAGCC 8762 || || ||||| ||| | ||||| || || |||||||| | || || |||| ||| Sbjct 1014 AATTTAAATCATCTTCTTCAGTACAATCCGCAACAAATTGACATTTCTAACACTCGTGCC 955 Query 8763 ACACATGAGCAGTTTGCCGCGTGGCATCAGGCAGTGATGACAGCCTATGGAGTGAATGAA 8822 || ||| || |||| |||| || ||| ||||| || | ||||| | ||||| Sbjct 954 ACTCATTCACAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGAT 895 Query 8823 GAGCAAATGAAAATATTGCTAAATGGATTTATGGTGTGGTGCATAGAAAATGGGACTTCC 8882 | ||||| || | |||||||||| || ||||| ||||| || || ||||| || || Sbjct 894 AATGAAATGCAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCT 835 Query 8883 CCAAATTTGAACGGAACTTGGGTTATGATGGATGGTGAGGATCAAGTTTCATACCCGCTG 8942 ||| | | || ||||||||||||||||| || |||||| || || | Sbjct 834 CCAGACATATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATC 775 Query 8943 AAACCAATGGTTGAAAACGCGCAGCCAACACTGAGGCAAATTATGACACACTTCAGTGAC 9002 || || || |||| | || || || | |||||||||||| | ||||| ||| || Sbjct 774 AAGCCTTTGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAAC 715 Query 9003 CTGGCTGAAGCGTATATTGAGATGAGGAAT---AGGGAGCGACCATACATGCCTAGGTAT 9059 ||| ||||| || |||| || ||| ||| | ||| | |||||||| ||||| Sbjct 714 GCGGCAGAAGCATACATTGCGAAGAGAAATGCTACTGAGAGG---TACATGCCGCGGTAT 658 Query 9060 GGTCTACAGAGAAACATTACAGACATGAGTTTGTCACGCTATGCGTTCGACTTCTATGAG 9119 || | ||||||| | || ||||| || | | | || || ||||||||||||||| Sbjct 657 GGAATCAAGAGAAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAG 598 Query 9120 CTAACTTCAAAAACACCTGTTAGAGCGAGGGAGGCGCATATGCAAATGAAAGCTGCTGCA 9179 | | ||| |||||||||| ||| || | || || || ||||| ||||| ||||| || Sbjct 597 GTGAATTCGAAAACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCG 538 Query 9180 GTACGAAA---CAGTGGAACTAGGTTATTTGGTCTTGATGGCAACGTGGGTACTGCAGAG 9236 | ||||| |||| | | | | |||||| | || |||| || ||| || Sbjct 537 CTGCGAAACACCAGTCGCAAAA---TGTTTGGTATGGACGGCAGTGTTAGTAACAAGGAA 481 Query 9237 GAAGACACTGAACGGCACACAGCGCACGATGTGAACCGTAACATGCAC 9284 ||| |||| || | ||||||| | | ||||| || | |||||||| Sbjct 480 GAAAACACGGAGAGACACACAGTGGAAGATGTCAATAGAGACATGCAC 433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30259551571168