Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_001616.1 Length=9704 Score E Sequences producing significant alignments: (Bits) Value seq4616 181 7e-42 seq4566 87.8 1e-13 >seq4616 Length=1066 Score = 181 bits (200), Expect = 7e-42 Identities = 398/587 (68%), Gaps = 22/587 (4%) Strand=Plus/Minus Query 8759 ACCGTGCTAAACTTAGAACATTTGCTTGAGTATGCTCCACAACAAATTGATATTTCAAAT 8818 || || || || ||| | ||| | ||| |||| ||| ||||||||||| ||||| || Sbjct 1023 ACTGTCCTTAATTTAAATCATCTTCTTCAGTACAATCCGCAACAAATTGACATTTCTAAC 964 Query 8819 ACTCGGGCAACTCAATCACAGTTTGATACGTGGTATGAGGCAGTGCGGATGGCATACGAC 8878 ||||| || ||||| ||||| ||||| | ||||||||||| |||| ||| | || | | Sbjct 963 ACTCGTGCCACTCATTCACAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGC 904 Query 8879 ATAGGAGAAACTGAGATGCCAACTG-TGATGAATGGGCTTATGGTTTGGTGCATTGAAAA 8937 | || | ||| ||| ||| || || | ||||| | ||||||||||| || || || Sbjct 903 CTTAATGATAATGAAATG-CAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAA 845 Query 8938 TGGAACCTCGCCAAATGTCAACGGAGTTTGGGTTATGATGGATGGGAATGAACAAGTTGA 8997 ||| || || ||| | | || || |||||||||||||||||| | |||||||| Sbjct 844 TGGTACATCTCCAGACATATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGA 785 Query 8998 GTACCCGTTGAAACCAATCGTTGAGAATGCAAAACCAACCCTTAGGCAAATCATGGCACA 9057 || || | || || | ||||| |||| | || | |||||||||| ||||| || Sbjct 784 TTATCCAATCAAGCCTTTGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCA 725 Query 9058 TTTCTCAGATGTTGCAGAAGCGTATAT-------AGAAATGCGCAACAAAAAGGAACCAT 9110 || | | |||||||| || || |||||| || || | ||| | Sbjct 724 CTTTAGTAACGCGGCAGAAGCATACATTGCGAAGAGAAAT--GCTACTGAGAGG-----T 672 Query 9111 ATATGCCACGATATGGTTTAATTCGAAATCTGCGGGATATGGGTTTAGCGCGTTATGCCT 9170 | ||||| || ||||| | | ||||| || || || | | || | || || | Sbjct 671 ACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGACATTAGCCTCGCTAGATACGCTT 612 Query 9171 TTGACTTTTATGAGGTCACATCACGAACACCAGTGAGGGCTAGGGAAGCGCACATTCAAA 9230 | ||||| |||||||| | || |||||| | |||||| | ||||| ||||| || | Sbjct 611 TCGACTTCTATGAGGTGAATTCGAAAACACCTGATAGGGCTCGCGAAGCTCACATGCAGA 552 Query 9231 TGAAGGCCGCAGCATTG-AAATCAGCCCAACCTC-GACTTTTCGGGTTGGACGGTGGCAT 9288 ||||||| ||||| || || || ||| | | | | || || ||||||| | | Sbjct 551 TGAAGGCTGCAGCGCTGCGAAACA--CCAGTCGCAAAATGTTTGGTATGGACGGCAGTGT 494 Query 9289 CAGTACACAA-GAGGAGAACACAGAGAGGCACACCACCGAGGATGTC 9334 |||| |||| || || ||||| ||||| ||||| || |||||| Sbjct 493 TAGTA-ACAAGGAAGAAAACACGGAGAGACACACAGTGGAAGATGTC 448 >seq4566 Length=1050 Score = 87.8 bits (96), Expect = 1e-13 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 8759 ACCGTGCTAAACTTAGAACATTTGCTTGAGTATGCTCCACAACAAATTGATATTTCAAAT 8818 || || || || ||| | ||| | ||| |||| ||| ||||||||||| ||||| || Sbjct 943 ACTGTCCTTAATTTAAATCATCTTCTTCAGTACAATCCGCAACAAATTGACATTTCTAAC 1002 Query 8819 ACTCGGGCAACTCAATCACAGTTTGATACGTGGTATGAGGCAGTGCGG 8866 ||||| || ||||| ||||| ||||| | ||||||||||| |||| || Sbjct 1003 ACTCGTGCCACTCATTCACAATTTGAGAAGTGGTATGAGGGAGTGAGG 1050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30931417275328