Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_001671.1 Length=9924 Score E Sequences producing significant alignments: (Bits) Value seq4616 232 4e-57 >seq4616 Length=1066 Score = 232 bits (256), Expect = 4e-57 Identities = 404/581 (70%), Gaps = 10/581 (2%) Strand=Plus/Minus Query 9177 TACAATCCAGCACAAGTTGACATTTCAAACACTCGAGCAACGCAGAGCCAGTTCGATAAC 9236 |||||||| |||| |||||||||| |||||||| || || || || || || || Sbjct 993 TACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATTCACAATTTGAGAAG 934 Query 9237 TGGTG-GAGGGCAGTGTCGCAAGAGTACGGGGTTGGAGACAATGAAATGCAAGTTTTGGC 9295 |||| ||||| |||| | | || || || || || |||||||||||||| || Sbjct 933 TGGTATGAGGG-AGTGAGGAATGATTATGGCCTTAATGATAATGAAATGCAAGTGATGCT 875 Query 9296 AAGTGGTTTGATGGTATGGTGCATTGAAAATGGAACATCGCCTAACATAAATGGGATGTG 9355 || |||||||||||| ||||| || || ||||| ||||| || ||||| ||| | || Sbjct 874 AAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTG 815 Query 9356 GACAATGATGGACGGGGAAGAGCAGGTTGAGTACCCCCTAAAGCCAGTGATGGATAATGC 9415 | |||||||| |||||| || ||||| || || | ||||| |||| || |||| Sbjct 814 GGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGC 755 Query 9416 GCGTCCAACTTTCAGACAGATAATGGCGCATTTCAGTGACGTAGCGGAGGCGTACATTGA 9475 ||| | || || || || ||||| || || ||| ||| || || || ||||||| Sbjct 754 TACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGC 695 Query 9476 AAAGAGAAACTCAACAGAGGTGTACATACCCAGGTACGCTCTACAACGCAATTTAAGGGA 9535 |||||||| | || ||| |||||| || |||| | | | | ||||| | || Sbjct 694 GAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGA 635 Query 9536 CCCGAGTCTTGCAAGATATGGTTTCGACTTCTACGAAATCACAGCAAAGACACCTGTGAG 9595 | || || || ||||| | |||||||||||| || | | | || ||||||| || Sbjct 634 CATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGATAG 575 Query 9596 GGCAAGAGAGGCACACTTTCAGATGAAAGCAGCAGCAATCAGAGGAAAATCCAATAGC-- 9653 ||| | || || ||| | |||||||| || ||||| | |||| ||| | || Sbjct 574 GGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCT---GCGAAACACCAGTCGCAA 518 Query 9654 -CTATTTGGCTTGGATGGGAACGTTGGGACACAGGAGGAGAACACGGAGAGGCACACAGC 9712 | ||||| |||| || | ||| | | |||| || ||||||||||| ||||||| Sbjct 517 AATGTTTGGTATGGACGGCAGTGTTAGTAACAAGGAAGAAAACACGGAGAGACACACAGT 458 Query 9713 AGAAGATGTCAATCAGA-ATATGCACAATCTTCTCGGAATG 9752 |||||||||||| ||| | |||||| ||| || || ||| Sbjct 457 GGAAGATGTCAAT-AGAGACATGCACTCTCTCCTGGGTATG 418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31635276584448