Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq3428 123 9e-25 seq3331 109 2e-20 seq9755 107 7e-20 seq3487 87.8 7e-14 >seq3428 Length=1014701 Score = 123 bits (136), Expect = 9e-25 Identities = 98/118 (83%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||| ||| |||||| |||||| || ||| ||||| | ||||| | | Sbjct 712757 TTTATGATACTATACAATTTGTGCAACCAGATATATAAACAATATGCATGGGATTGACTG 712816 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||| | ||||||||||||||||| ||| ||||||||||||| Sbjct 712817 CTTCAATGGGATCTTTTATTATAGTCGGAGGAGAAATTACTAAATGTCTAGCATTCCC 712874 >seq3331 Length=457137 Score = 109 bits (120), Expect = 2e-20 Identities = 95/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||| |||||| ||| |||||| |||||| | ||||||||| | ||||| || Sbjct 353604 TTTATTGTACTATACAATTTGTGCAACCAGATGCACAGACAGTATGCATGGGATTGGCTA 353663 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||| || ||| |||||||||| | | ||||||||||||| Sbjct 353664 CTTCAATGGGATCTTTTATCCTAGTTGGACGAGAAATTACTAGATGTCTAGCATTCCC 353721 >seq9755 Length=1776 Score = 107 bits (118), Expect = 7e-20 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | ||| ||||| | ||||| || | Sbjct 1417 TTTATGATACTATGCAATTTGTGCAACCAGATGTATAGACAATATGCATGGGATTGGCTG 1476 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTA 100 |||||||| ||||| ||||||| |||||||||||||||| Sbjct 1477 CTTCAATGTGATCTTTTATCCTAGTCGGAGGAGAAATTA 1515 >seq3487 Length=2134545 Score = 87.8 bits (96), Expect = 7e-14 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||| ||||||||||| |||||| |||||| | | ||| ||||| | ||||| | | Sbjct 134298 TTTATAATACTATGCAATTTGTGCAACCAGATGTACAGACAATATGCATGGGATTGACTG 134357 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGG 92 |||||||||||||| ||||||| || ||||| Sbjct 134358 CTTCAATGGGATCTTTTATCCTAGTTGGAGG 134388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19042699403520