Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_001768.1 Length=9475 Score E Sequences producing significant alignments: (Bits) Value seq4616 140 2e-29 >seq4616 Length=1066 Score = 140 bits (154), Expect = 2e-29 Identities = 320/476 (67%), Gaps = 12/476 (3%) Strand=Plus/Minus Query 8741 AAATGAAAATAGTGCTCAATGGCTTCATGATTTGGTGTATAGAGAATGGAACGTCACCAA 8800 ||||| || | |||| ||||| || ||| |||||||||| |||||||| || || ||| Sbjct 890 AAATGCAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAG 831 Query 8801 ACATCAGTGGTGTGTGGACCATGATGGATGGTGATGAACAAGTGGAGTATCCAATCGAAC 8860 |||| |||||| ||| ||||||||||| || ||||| || ||||||||| | | Sbjct 830 ACATATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGC 771 Query 8861 CAATGGTGAAGCATGCGAATCCCTCATTACGTCAGATAATGAAACACTTTAGTAATCTTG 8920 | || | ||||||| | ||| ||||| | || || ||| ||||||||||| | Sbjct 770 CTTTGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGG 711 Query 8921 CTGAGGCTTACATAAGGATGAGGAATTCAGAACAGGTCTACATACCCAGGTATGGCCTGC 8980 | || || ||||| || ||| ||| | || ||||| || ||||||| | Sbjct 710 CAGAAGCATACATTGCGAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCA 651 Query 8981 AGCGCGGATTAGTAGACAGAAACCTGGCACCGTTTGCCTTTGACTTCTTTGAGGTTAATG 9040 || | || |||| | ||| || | || || ||||||| |||||| ||| Sbjct 650 AGAGAAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATT 591 Query 9041 GGGCAACACCAGTCCGGGCAAGAGAAGCGCATGCACAAATGAAGGCGGCCGCACTCCGCA 9100 | |||||| | |||| | ||||| || || |||||||| || || || || | Sbjct 590 CGAAAACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAA 531 Query 9101 ATTCGCAGCAG-CGC---ATGTTTTGTCTGGATGGCAGCGTGTCAG-GGCAA-GAAGAGA 9154 | || ||| ||| |||||| || |||| |||| |||| || ||| ||||| | Sbjct 530 A----CACCAGTCGCAAAATGTTTGGTATGGACGGCA--GTGTTAGTAACAAGGAAGAAA 477 Query 9155 ACACAGAACGCCATACTGTTGACGATGTTAATGCTCAAATGCACCACCTTCTGGGT 9210 |||| || | || || || || ||||| ||| | |||||| || |||||| Sbjct 476 ACACGGAGAGACACACAGTGGAAGATGTCAATAGAGACATGCACTCTCTCCTGGGT 421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30198763721744