Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_001814.1 Length=9535 Score E Sequences producing significant alignments: (Bits) Value seq4616 114 8e-22 >seq4616 Length=1066 Score = 114 bits (126), Expect = 8e-22 Identities = 309/470 (66%), Gaps = 2/470 (0%) Strand=Plus/Minus Query 8772 ATCATCTGATTAAATACACACCTGATCAGCGTGACTTGTCTAACACACGCGCGACACAAG 8831 ||||||| || | |||| || | || |||| | |||||||| || || || || Sbjct 1007 ATCATCTTCTTCAGTACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATT 948 Query 8832 AGCAATTTGAGAAATGGTACTCAGGTGTGAGGAATGAAGTTGAGAAGACGGATGAAGAAA 8891 ||||||||||| ||||| || ||||||||||| || | ||| | |||| Sbjct 947 CACAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAA 888 Query 8892 TGGCACTATTACTGAATGGCTCCATGGTTTGGTGCATGGAAAATGGCACATCACCAGATT 8951 || | | | || ||||| | ||||||||||| || || ||||| ||||| ||||| Sbjct 887 TGCAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACA 828 Query 8952 TATCCGG-GTCTTGGACTATGATGGAAGGTGAAGAGCAGATAGCGTATCCACTCGAACCA 9010 |||| || ||| ||| ||||||||| || ||| || | | |||||| || | || Sbjct 827 TATCTGGTGTC-TGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCT 769 Query 9011 TTCTGTCGTCACGCACAACCAACGTTGCGGTCAATAATGGCACATTTTAGTGATGCCGCA 9070 || | || || || | || || ||| ||||| || |||||| | || ||| Sbjct 768 TTGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCA 709 Query 9071 ACAGCATATGTAGTCCTACGCAATCAGAAGTCCAGATACATGCCACGGTATGGACTTAAA 9130 |||||| | | | ||| | || |||||||| ||||||||| | || Sbjct 708 GAAGCATACATTGCGAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAG 649 Query 9131 AGAGGTTTGAACGACTATTCACTGGCACCGTACGCTTTCGACTTCTATGAAATAACTTCC 9190 ||| ||||| ||| | || || |||||||||||||||||||| | | ||| Sbjct 648 AGAAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCG 589 Query 9191 ACATCGCCTCTTCGGGCTAGAGAGCGGCATGCGCAGATGAAAGCCGCAGC 9240 | | | ||| | ||||| | || || ||||||||| || ||||| Sbjct 588 AAAACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGC 539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30390725351504