Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_001841.1 Length=10820 Score E Sequences producing significant alignments: (Bits) Value seq4616 196 3e-46 >seq4616 Length=1066 Score = 196 bits (216), Expect = 3e-46 Identities = 363/533 (68%), Gaps = 20/533 (4%) Strand=Plus/Minus Query 10019 AACAGTTTGAGGTTGCAAACACCCGGTCGACTCAAGAACAGTTTCAAGCATGGTATGAGG 10078 |||| |||| || | ||||| || | ||||| ||| ||| | |||||||||| Sbjct 983 AACAAATTGACATTTCTAACACTCGTGCCACTCATTCACAATTTGAGAAGTGGTATGAGG 924 Query 10079 GAGTGAAAGGGGACTATGGTGTTGACGATACAGGAATG---GGGATCTTATTGAATGGAT 10135 |||||| || ||||| || | |||| | |||| | ||| || ||||| | Sbjct 923 GAGTGAGGAATGATTATGGCCTTAATGATAATGAAATGCAAGTGATGCTA---AATGGTT 867 Query 10136 TAATGGTTTGGTGCATTGAAAATGGCACATCCCCAAATATAAATGGCGTGTGGACTATGA 10195 | ||||||||||| || || ||||| ||||| ||| | ||| ||| || ||| ||||| Sbjct 866 TGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGGGTTATGA 807 Query 10196 TGGATGGTGATGAGCAAGTGACATATCCAATTAAACCATTGTTGGACCATGCAGTGCCTA 10255 ||||||| || ||||| |||||||| || || ||| | || ||||| || Sbjct 806 TGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCTACTCCGT 747 Query 10256 CTTTTAGGCAGATTATGACGCACTTCAGTGACGTTGCTGAAGCTTACATAGAAATGCGAA 10315 | |||||||| |||||| | ||||| ||| ||| || ||||| ||||| | | | ||| Sbjct 746 CATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCGAAGAGAA 687 Query 10316 ACCGTACAAAGGCGTACATGCCGAGGTATGGTCTACAACGTAATTTGACTGATATGAGTC 10375 | ||| || |||||||||| ||||||| | | | ||||||||||| || || | Sbjct 686 ATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGACATTAGCC 627 Query 10376 TTGCGCGATATGCATTTGATTTCTACGAGCTGCATTCAACCACCCCTGCACGTGCAAAAG 10435 | || |||| || || || ||||| ||| || |||| | || |||| | || | Sbjct 626 TCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGATAGGGCTCGCG 567 Query 10436 AAGCACATTTACAGATGAAGGCAGCCGCGCTTAAGAATGCGAAAAATCGGT-------TG 10488 |||| || | ||||||||||| || |||| ||||||| | | || || Sbjct 566 AAGCTCACATGCAGATGAAGGCTGCAGCGC-------TGCGAAACACCAGTCGCAAAATG 514 Query 10489 TTTGGTTTGGACGGAAACGTCTCCACGCAAGAAGAAGATACGGAGAGGCACAC 10541 |||||| ||||||| | || | | |||||| | |||||||| ||||| Sbjct 513 TTTGGTATGGACGGCAGTGTTAGTAACAAGGAAGAAAACACGGAGAGACACAC 461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34501903588864