Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_002509.2 Length=9835 Score E Sequences producing significant alignments: (Bits) Value seq4616 183 2e-42 >seq4616 Length=1066 Score = 183 bits (202), Expect = 2e-42 Identities = 352/514 (68%), Gaps = 4/514 (1%) Strand=Plus/Minus Query 9086 CAGTTTGACACATGGTTTGAAGGTGTAATGGCTGATTACGAACTGACGGAGGACAAAATG 9145 || ||||| | |||| ||| || || | | |||||| | || | || | ||||| Sbjct 945 CAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAATG 886 Query 9146 CAAATCATTCTCAATGGTTTAATGGTCTGGTGCATTGAGAACGGAACCTCCCCGAACATA 9205 ||| | || || |||||||| ||||| ||||| || ||||| || || || || ||||| Sbjct 885 CAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATA 826 Query 9206 AACGGAATGTGGGTGATGATGGACGGCGACGATCAGGTGGAATTCCCGATCAAACCGCTC 9265 || | ||||| |||||||| || || || || || | || ||||| || | Sbjct 825 TCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTG 766 Query 9266 ATTGACCACGCCAAACCCACATTTAGGCAGATAATGGCCCATTTCAGTGACGTAGCTGAA 9325 ||||| || || | || |||||||||| || ||||| || || ||| ||| || ||| Sbjct 765 ATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAA 706 Query 9326 GCGTACATTGAAAAGCGTAACCAAGACCGACCA-TACATGCCACGATATGGTCTTCAGCG 9384 || ||||||| ||| | || || || |||||||| || ||||| | || | Sbjct 705 GCATACATTGCGAAGAGAAATGCT-ACTGAGAGGTACATGCCGCGGTATGGAATCAAGAG 647 Query 9385 CAATTTAACCGACATGAGCTTAGCTCGATACGCATTTGATTTCTATGAAATGACTTCTAG 9444 ||||| || ||||| ||| | ||| ||||||| || || |||||||| ||| ||| | Sbjct 646 AAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAA 587 Query 9445 GACTCCA-ATACGTGCGAGAGAGGCACACATCCAGATGAAAGCAGCAGCACTGCGTGGCG 9503 || || ||| | || | || || ||||| |||||||| || ||||| ||||| | Sbjct 586 AACACCTGATAGG-GCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAACA 528 Query 9504 CAAATAATAATTTGTTCGGCTTGGATGGAAACGTTGGTACAACGGTAGAGAACACGGAGA 9563 | | | || |||| || |||| || | ||| ||| | || ||| |||||||||| Sbjct 527 CCAGTCGCAAAATGTTTGGTATGGACGGCAGTGTTAGTAACAAGGAAGAAAACACGGAGA 468 Query 9564 GGCATACGACCGAGGACGTTAATCGGAACATGCA 9597 | || || || || || ||| | ||||||| Sbjct 467 GACACACAGTGGAAGATGTCAATAGAGACATGCA 434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31350533500304