Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_002600.1 Length=9709 Score E Sequences producing significant alignments: (Bits) Value seq4616 125 4e-25 >seq4616 Length=1066 Score = 125 bits (138), Expect = 4e-25 Identities = 311/465 (67%), Gaps = 14/465 (3%) Strand=Plus/Minus Query 8955 AATGGGCTGATGGTTTGGTGCATTGAGAATGGCACCTCACCAAATATCAACGGAAATTGG 9014 ||||| ||||||||||||| || |||||||| || || ||| | || || ||| Sbjct 873 AATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGG 814 Query 9015 ACCATGATGGACGGGCACGAGCAAAATGAGTATCCATTAAAGCCTGTCATTGAAAACGCC 9074 |||||||| ||| | ||| ||| |||||| | |||||| | ||||| | || Sbjct 813 GTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCT 754 Query 9075 AAGCCAACATTTCGTCAGATAATGCACCATTTTTCAGACGCGGCTGAGGCGTACATTGAG 9134 | || ||||| | || || ||| || ||| ||||||| || || ||||||| | Sbjct 753 ACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCG 694 Query 9135 ATGAGAAATGCAGAAAAACCGTACATGCCTAGGTATGGTTTACAAAGAAATCT--CCGAG 9192 | ||||||||| | ||||||||| ||||||| | | |||||| | | || Sbjct 693 AAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGAC 634 Query 9193 ATTTCAGTTACGCTCGCATA-GCATTCGATTTTTATGAAATCACGTCGCGTACATCAGCT 9251 ||| || |||| | ||| || ||||| || ||||| | | ||| ||| | | | Sbjct 633 ATT--AGCCTCGCTAG-ATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGAT 577 Query 9252 AAAGCGCGTGAAATCCACATGCAGATGAAGGCAGCAGCGTT---AAATAAC-GTGGCTAT 9307 | || || ||| ||||||||||||||||| |||||| | ||| | | || || Sbjct 576 AGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAACACCAGTCGC--- 520 Query 9308 TAAGACATTTGGTCTTGATGGTAACGTCGGAACCCAGGATGAAGACACAGAAAGGCACAC 9367 || | |||||| | || || | || | | | |||| ||| |||| || || ||||| Sbjct 519 -AAAATGTTTGGTATGGACGGCAGTGTTAGTAACAAGGAAGAAAACACGGAGAGACACAC 461 Query 9368 TGCAAATGATGTGAACCGAAACATGCATAGTCTGTTAGGTATGCG 9412 | | ||||| || || ||||||| ||| | |||||||| Sbjct 460 AGTGGAAGATGTCAATAGAGACATGCACTCTCTCCTGGGTATGCG 416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30947414077808