Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_002634.1 Length=9588 Score E Sequences producing significant alignments: (Bits) Value seq4616 161 6e-36 >seq4616 Length=1066 Score = 161 bits (178), Expect = 6e-36 Identities = 349/521 (67%), Gaps = 6/521 (1%) Strand=Plus/Minus Query 8682 AAGATGAATCTTCCAATGGTTGAAGGGAAGATCATCCTCAGTTTGGACCACTTGCTTGAG 8741 |||||| ||| || | || | ||||||| |||| | ||| | || | ||| || Sbjct 1053 AAGATGGTTCTACCGAGAATTAAGGGGAAGACTGTCCTTAATTTAAATCATCTTCTTCAG 994 Query 8742 TACAAACCTAATCAGGTTGATTTATTCAACACTCGAGCAACAAGAACACAGTTCGAAGCG 8801 ||||| || | || |||| | | |||||||| || || |||| || || | Sbjct 993 TACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATTCACAATTTGAGAAG 934 Query 8802 TGGTACAATGCAGTTAAAGATGAATATGAGCTTGACGATGAGCAGATGGGTGTGGTTATG 8861 ||||| | | ||| | |||| |||| ||| | ||| | | ||| ||| | | Sbjct 933 TGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAATGCAAGTGATGCTA 874 Query 8862 AATGGCTTCATGGTATGGTGCATTGACAATGGTACATCTCCAGATGCTAATGGCGTGTGG 8921 ||||| || ||||| ||||| || || ||||||||||||||||| ||| || ||| Sbjct 873 AATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGG 814 Query 8922 GTGATGATGGATGGAGAGGAACAGATTGAATATCCGCTGAAACCCATTGTCGAAAATGCA 8981 || ||||||||||| || || |||| ||||| | || || | | || |||| Sbjct 813 GTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCT 754 Query 8982 AAACCAACTTTGAGACAAATCATGCACCATTTCTCAGATGCAGCAGAAGCTTACATTGAG 9041 | || | || || ||||| ||| || || | || |||||||| ||||||| | Sbjct 753 ACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCG 694 Query 9042 ATGAGAAA---TTCTGAAAGTCCGTATATGCCTAGATATGGACTACTGAGGAATTTGAGA 9098 | |||||| | |||| || ||| ||||| | |||||| | ||| ||||||| Sbjct 693 AAGAGAAATGCTACTGAGAG---GTACATGCCGCGGTATGGAATCAAGAGAAATTTGACT 637 Query 9099 GATAGAGAGCTAGCTCGCTATGCTTTTGATTTCTATGAGGTTACTTCTAAAACACCAAAC 9158 || | || ||| | || ||||| || ||||||||||| | ||| |||||||| | Sbjct 636 GACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGAT 577 Query 9159 AGGGCAAGGGAAGCAATAGCGCAGATGAAGGCTGCAGCTCT 9199 ||||| | ||||| |||||||||||||||||| || Sbjct 576 AGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCT 536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30560291457792