Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_003224.1 Length=9591 Score E Sequences producing significant alignments: (Bits) Value seq4616 140 2e-29 >seq4616 Length=1066 Score = 140 bits (154), Expect = 2e-29 Identities = 317/477 (66%), Gaps = 10/477 (2%) Strand=Plus/Minus Query 8777 ATCATTTGCTGGAATATAAGCCGGATCAAATTGAGTTGTATAACACACGAGCGTCTCATC 8836 ||||| | || | || || ||| | |||||||| | | |||||| || || ||||| Sbjct 1007 ATCATCTTCTTCAGTACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATT 948 Query 8837 AGCAATTTTCCTCCTGGTTTAATCAAGTTAGAACAGAATATGATTTGAATGAGCAACAGA 8896 |||||| |||| | | ||| || | || |||| | ||||| | | | Sbjct 947 CACAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAA 888 Query 8897 TGGGAGTTGTAATGAATGGTTTCATGGTTTGGTGCATTGAAAATGGCACTTCGCCTGATA 8956 || ||| | | |||||||| ||||||||||| || || ||||| || || || || | Sbjct 887 TGCAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACA 828 Query 8957 TCAATGGAGTGTGGTTCATGATGGATGGAGATGAGCAGGTCGAGTATCCTTTGAAACCAA 9016 | ||| || ||| | ||||||||||| || || || || ||||| | || || Sbjct 827 TATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTT 768 Query 9017 TAGTCGAAAATGCAAAGCCAACGCTGCGACAAATAATGCATCACTTCTCAGATGCAGCGG 9076 | | || |||| | || | | | ||||| ||| |||||| | || || | Sbjct 767 TGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAG 708 Query 9077 AGGCATACATAGAAATGAGAAATGC-----AGAGGCACCATACATGCCGAGGTATGGTTT 9131 | |||||||| | | ||||||||| ||||| ||||||||| ||||||| | Sbjct 707 AAGCATACATTGCGAAGAGAAATGCTACTGAGAGG-----TACATGCCGCGGTATGGAAT 653 Query 9132 GCTTCGAAATCTACGGGATAGGAGTTTGGCTCGATACGCTTTCGACTTCTACGAAGTCAA 9191 ||||| | || | || | ||| ||||||||||||||||||| || || || Sbjct 652 CAAGAGAAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAA 593 Query 9192 CTCTAAAACTCCTGAAAGAGCCCGCGAAGCTGTTGCGCAGATGAAAGCAGCAGCTCT 9248 || ||||| ||||| || || ||||||||| ||||||||| || ||||| || Sbjct 592 TTCGAAAACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCT 536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30569889539280