Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_003377.1 Length=9515 Score E Sequences producing significant alignments: (Bits) Value seq4616 161 6e-36 >seq4616 Length=1066 Score = 161 bits (178), Expect = 6e-36 Identities = 311/456 (68%), Gaps = 2/456 (0%) Strand=Plus/Minus Query 8675 TACAAGCCACAACAACAAGACTTATCGAACACCCGAGCAACCAGGGCTGAATTCGATAGA 8734 ||||| || |||||| ||| | || ||||| || || || | |||| || | Sbjct 993 TACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATTCACAATTTGAGAAG 934 Query 8735 TGGTATGAAGCAGTGCAGAAAGAATACGAACTTGATGATACACAAATGACGGTTGTCATG 8794 |||||||| | |||| ||| || || | ||| |||||| ||||| || | | Sbjct 933 TGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAATGCAAGTGATGCTA 874 Query 8795 AGTGGATTAATGGTTTGGTGCATTGAGAATGGTTGCTCACCAAACATCAATGGAGTCTGG 8854 | ||| || ||||||||||| || ||||||||| || ||| |||| ||| |||||| Sbjct 873 AATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGG 814 Query 8855 ACAATGATGGATGGAGACGAACAGAGAACATT-TCCTTTAAAACAGGTTATTGGAAATGC 8913 ||||||||||| || || || ||| ||| | || | | |||| |||| Sbjct 813 GTTATGATGGATGGGGAAACCCA-AGTTGATTATCCAATCAAGCCTTTGATTGAGCATGC 755 Query 8914 ATCTCCAACTTTCAGACAAATTATGCATCATTTTAGTGATGCAGCTGAAGCATACATTGA 8973 |||| | || || ||||||||| ||| |||||| | || || ||||||||||||| Sbjct 754 TACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGC 695 Query 8974 GTATAGAAATTCAACAGAAAGATATATGGCGAGATATGGACTTCAGCGAAACTTAACCGA 9033 | | |||||| | || || || || ||| || | |||||| | || |||| || || || Sbjct 694 GAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGA 635 Query 9034 CTTTAGCCTTGCACGCTATGCATTTGATTTTTACGAGATATCATCTCGAACTCCAGCACG 9093 | ||||||| || | || || || || || || ||| | || ||| || | | Sbjct 634 CATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGATAG 575 Query 9094 TGCAAAGGAAGCCCACATGCAGATGAAGGCCGCAGC 9129 || ||||| ||||||||||||||||| ||||| Sbjct 574 GGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGC 539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30326738141584