Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_003397.1 Length=9992 Score E Sequences producing significant alignments: (Bits) Value seq4616 172 3e-39 >seq4616 Length=1066 Score = 172 bits (190), Expect = 3e-39 Identities = 410/609 (67%), Gaps = 18/609 (3%) Strand=Plus/Minus Query 9128 AATTTAGACCATCTATTGGATTACAAGCCAGAACAAACTGATCTTTTTAACACAAGAGCA 9187 |||||| | ||||| | | ||||| || |||||| ||| ||| |||||| | || Sbjct 1014 AATTTAAATCATCTTCTTCAGTACAATCCGCAACAAATTGACATTTCTAACACTCGTGCC 955 Query 9188 ACAAAGATGCAGTTTGAAATGTGGTACAATGCTGTGAAGGGCGAGTATGAGATAGATGAT 9247 || | || ||||| | |||||| | | |||| | || |||| | ||||| Sbjct 954 ACTCATTCACAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGAT 895 Query 9248 GCACAAATGTCAATTG-TAATGAATGGCTTCATGGTATGGTGTATTGACAATGGCACTTC 9306 ||||| ||| || | | ||||| || ||||| |||||||| || ||||| || || Sbjct 894 AATGAAATG-CAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATC 836 Query 9307 ACCGGATGTGAATGGCACATGGGTGATGATGGATGGAGACGAGCAAGTTGAGTACCCACT 9366 || || | ||| ||||| ||||||||||| || |||||||| || ||| | Sbjct 835 TCCAGACATATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAAT 776 Query 9367 CAAACCAATGGTTGAAAATGCAAAGCCAACACTCCGTCAAATCATGCACCATTTCTCAGA 9426 ||| || || |||| |||| | || || | | ||||| ||| || || | Sbjct 775 CAAGCCTTTGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAA 716 Query 9427 TGCAGCTGAGGCATACATTGAGATGAGAAA---TTCCGAGAAACCGTACATGCCTAGGTA 9483 || || || |||||||||| || |||||| | | |||| ||||||||| |||| Sbjct 715 CGCGGCAGAAGCATACATTGCGAAGAGAAATGCTACTGAGA---GGTACATGCCGCGGTA 659 Query 9484 CGGATTGCTTCGGAATTTGAGGGATAAAAATCTAGCTCGCTACGCTTTTGATTTCTATGA 9543 ||| | | ||||||| || | | || ||| | |||||||| || |||||||| Sbjct 658 TGGAATCAAGAGAAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGA 599 Query 9544 GGTGACATCCAAAACATCGGATCGAGCCAGAGAAGCAGTAGCA--CAGATGAAGGCAGCA 9601 ||||| || |||||| | ||| | || | ||||| | || ||||||||||| ||| Sbjct 598 GGTGAATTCGAAAACACCTGATAGGGCTCGCGAAGC--TCACATGCAGATGAAGGCTGCA 541 Query 9602 GCCCTCAGCAACGTTAGCAGCAAGTTGTTTGGACTTGATGGTAATGTT-GCAACAACCAG 9660 || || | ||| || |||| ||||||| | || || | |||| | ||||| | Sbjct 540 GCGCTGCGAAACACCAGTCGCAAAATGTTTGGTATGGACGGCAGTGTTAGTAACAAGGA- 482 Query 9661 CGAAAATACTGAGAGGCACAC--TGCAAGGGACGTCAATCAAAACATGCACACACTTCTT 9718 ||||| || ||||| ||||| || || || |||||| | |||||||| | || || Sbjct 481 AGAAAACACGGAGAGACACACAGTGGAA--GATGTCAATAGAGACATGCACTCTCTCCTG 424 Query 9719 GGCATGGGC 9727 || ||| || Sbjct 423 GGTATGCGC 415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31852833098176