Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_003398.1 Length=9596 Score E Sequences producing significant alignments: (Bits) Value seq4616 161 6e-36 >seq4616 Length=1066 Score = 161 bits (178), Expect = 6e-36 Identities = 382/578 (66%), Gaps = 12/578 (2%) Strand=Plus/Minus Query 8751 TATAAACCACAACAGCAAGATATATCAAACACTAGAGCAACTAAGGAAGAGTTTGATAGA 8810 || || || ||||| || || || |||||| | || ||| | | | ||||| | Sbjct 993 TACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATTCACAATTTGAGAAG 934 Query 8811 TGGTACGATGCCATAAAGAAGGAGTACGAAATTGATGACACACAAATGACAGTTGTCATG 8870 ||||| || | | | ||| || || | || |||| | ||||| ||| | | Sbjct 933 TGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAATGCAAGTGATGCTA 874 Query 8871 AGTGGTCTCATGGTATGGTGCATCGAAAATGGTTGCTCACCAAACATAAACGGAAATTGG 8930 | |||| | ||||| ||||| ||||| |||||| || ||| ||||| || ||| Sbjct 873 AATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGG 814 Query 8931 ACGATGATGGACGGAGACGAACAAAGGGTTTTTCCATTAAAGCCAGTCATTGAGAACGCA 8990 |||||||| || || ||| | || |||| | ||||| | |||||| | || Sbjct 813 GTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCT 754 Query 8991 TCTCCAACTTTCCGACAGATAATGCATCATTTTAGTGATGCAGCTGAAGCGTATATAGAG 9050 |||| | || | || || ||| ||| |||||| | || || ||||| || || | | Sbjct 753 ACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCG 694 Query 9051 TACCGAAACTCTACAGAGCGATACATGCCAAGATACGGTCTTCAGCGAAATCTCACCGAC 9110 | |||| |||| ||| | |||||||| | || || | || ||||| | || ||| Sbjct 693 AAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGAC 634 Query 9111 TATAGCTTAGCGCGGTATGCTTTCGATTTCTATGAAATGACTTCGCGCACACCAGCTAGA 9170 |||| | || | || |||||||| |||||||| ||| |||| ||||| | ||| Sbjct 633 ATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGATAGG 574 Query 9171 GCTAAGGAAGCCCACATGCAGATGAAAGCCGCAGCAGTTCGTGGTTCAAACACACGTC-- 9228 ||| ||||| |||||||||||||| || ||||| | || |||||| ||| Sbjct 573 GCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCG------AAACACCAGTCGC 520 Query 9229 ----TGTTCGGTCTGGACGGAAATGTCGGCGAGACTCAGGAGAATACAGAGAGACACACA 9284 |||| ||| ||||||| | ||| | | | | || || || |||||||||||| Sbjct 519 AAAATGTTTGGTATGGACGGCAGTGTTAGTAACAAGGAAGAAAACACGGAGAGACACACA 460 Query 9285 GCTGGCGACGTTAGTCGCAACATGCACTCTCTGTTGGG 9322 | | || || | | | ||||||||||||| |||| Sbjct 459 GTGGAAGATGTCAATAGAGACATGCACTCTCTCCTGGG 422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30585886341760