Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_003399.1 Length=9324 Score E Sequences producing significant alignments: (Bits) Value seq4616 257 1e-64 >seq4616 Length=1066 Score = 257 bits (284), Expect = 1e-64 Identities = 406/579 (70%), Gaps = 2/579 (0%) Strand=Plus/Minus Query 8528 TATAATCCCAATCAGGTGGATATATCAAACACACGAGCGACACAAGCGCAGTTTAACACA 8587 || ||||| | || | || || || ||||| || || || || | || ||| | | Sbjct 993 TACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATTCACAATTTGAGAAG 934 Query 8588 TGGTACGAGGGAGTCAAGGAGGAGTATGACCTTGACGACG-TGAAGATGCAAACCATCTT 8646 ||||| |||||||| | | | || |||| |||| | || |||| |||||| || | Sbjct 933 TGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAA-ATGCAAGTGATGCT 875 Query 8647 GAATGGTTTGATGGTGTGGTGTATCGAAAATGGTACATCACCAAATATAAACGGAATGTG 8706 |||||||||||||| ||||||||||| ||||||||||| ||| | ||| || | || Sbjct 874 AAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTG 815 Query 8707 GGTAATGATGGATAAGGATGAGCAAATTGAGTTTCCGATTAAACCATTAATCGACCACGC 8766 ||| ||||||||| ||| ||| |||| | ||| || || || || || || || || Sbjct 814 GGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGC 755 Query 8767 CAAACCCACATTTAGGCAAATAATGGCCCATTTCAGTAACGTAGCTGAAGCGTATATTGA 8826 | || ||||||||||||| ||||| || || ||||||| || ||||| || |||| Sbjct 754 TACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGC 695 Query 8827 GATGCGTAATCAAACAGTCCCATACATGCCACGGTATGGGCTTCAGCGCAATTTAACCGA 8886 || | | ||| || | |||||||| |||||||| | || | ||||| || || Sbjct 694 GAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGA 635 Query 8887 CATGAGTTTAGCGCGATATGCATTTGATTTTTATGAAATGACTTCAAAAACACCAATTCG 8946 ||| || | || |||| || || || || ||||| ||| ||| |||||||| | | Sbjct 634 CATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGATAG 575 Query 8947 TGCACGTGAGGCACATATTCAGATGAAGGCAGCAGCATTGCGAAACTCAAAGAACAACCT 9006 || || || || || || ||||||||||| ||||| |||||||| | | ||| | Sbjct 574 GGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAACACCAGTCGCAAAAT 515 Query 9007 TTTTGGTTTAGATGGCAACGTCGGCTTGACGGAGGAGAACACGGAGAGACACACGACTGA 9066 |||||| | || |||| || | | ||| || ||||||||||||||||| || Sbjct 514 GTTTGGTATGGACGGCAGTGTTAGTAACAAGGAAGAAAACACGGAGAGACACACAGTGGA 455 Query 9067 AGATGTTAGTAGGAACATGCATAGCCTCCTTGGCGTGCG 9105 |||||| | ||| ||||||| ||||| || |||| Sbjct 454 AGATGTCAATAGAGACATGCACTCTCTCCTGGGTATGCG 416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 29715660286848