Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_003492.1 Length=9532 Score E Sequences producing significant alignments: (Bits) Value seq4616 159 2e-35 >seq4616 Length=1066 Score = 159 bits (176), Expect = 2e-35 Identities = 242/342 (71%), Gaps = 2/342 (1%) Strand=Plus/Minus Query 8891 ATTCTGAATGGCCTTATGGTGTGGTGCATAGAGAATGGCACATCAGGAGATTTACAAGGT 8950 || || ||||| | ||||| ||||| || |||||||| ||||| ||| || ||| Sbjct 879 ATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGT 820 Query 8951 GAATGGACAATGATGGATGGAGAGGAGCAGGTGACATACCCTTTAAAACCTATCTTGGAC 9010 | ||| ||||||||||| || || || || || | || ||| | | || Sbjct 819 GTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAG 760 Query 9011 AATGCAAAGCCAACATTCCGCCAAATAATGTCACATTTCTCGGAA-GTTGCGGAAGCCTA 9069 |||| | || |||| | ||||| ||| | || || | | || | || ||||| || Sbjct 759 CATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTT-TAGTAACGCGGCAGAAGCATA 701 Query 9070 CATTGAAAAGAGGAATGCAACAGAGAGGTACATGCCACGGTATGGGCTTCAGAGGAACCT 9129 ||||| ||||| ||||| || |||||||||||||| |||||||| | |||| || | Sbjct 700 CATTGCGAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAATTT 641 Query 9130 AACTGATTATGGCTTGGCTAGATATGCTTTTGACTTCTACAAGCTGACTTCAAAAACTCC 9189 ||||| | || | |||||||| ||||| |||||||| || ||| ||| ||||| || Sbjct 640 GACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACC 581 Query 9190 TGTACGTGCTAGGGAAGCACACATGCAAATGAAGGCGGCAGC 9231 || | ||| | ||||| |||||||| |||||||| ||||| Sbjct 580 TGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGC 539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30381127270016