Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_003536.1 Length=9584 Score E Sequences producing significant alignments: (Bits) Value seq4616 170 1e-38 >seq4616 Length=1066 Score = 170 bits (188), Expect = 1e-38 Identities = 343/504 (68%), Gaps = 6/504 (1%) Strand=Plus/Minus Query 8884 GTGGCATGAAGGAGTCAAGAATGCGTATGAGGTGGATGATCAGCAAATGGAAATCATATG 8943 |||| |||| ||||| | ||||| |||| | ||||| | ||||| || | || Sbjct 934 GTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAATGCAAGTGATGCT 875 Query 8944 CAATGGATTGATGGTGTGGTGCATAGAGAATGGCACGTCAGGTGATCTTCAAGGTGAGTG 9003 ||||| |||||||| ||||| || |||||||| || || || | |||| || Sbjct 874 AAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTG 815 Query 9004 GACAATGATGGATGGAGAGAAGCAAGTAACATTCCCACTTAAGCCAATTCTTGACTTTGC 9063 | ||||||||||| || | ||||| | ||| | ||||| | |||| ||| Sbjct 814 GGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGC 755 Query 9064 CAAACCAACATTGAGGCAAATTATGGCCCACTTTTCCCAGGCAGCTGAATCATACATAGA 9123 | || |||| |||||||||||||| |||||| | || || ||| ||||||| | Sbjct 754 TACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGC 695 Query 9124 GTTCAGAAACTCAACAGAGAAATATATGCCTAGGTATGGGCTGCAGAGAAATCTCACAGA 9183 | ||||| | || |||| || ||||| ||||||| | |||||||| | || || Sbjct 694 GAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGA 635 Query 9184 TTATGGACTGGCCAGGTATGCATTTGACTTCTACAGGTTGACCTCAAAGACACCAGCAAG 9243 | | || || || || || || |||||||| | ||| || || ||||| | || Sbjct 634 CATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGATAG 575 Query 9244 AGCTCGAGAAGCACATATGCAAATGAAAGCAGCAGCAATAAGAGGAA--AGTCAAACCAC 9301 ||||| ||||| || ||||| ||||| || ||||| | || | |||| | | Sbjct 574 GGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAACACCAGTC--GCAAA 517 Query 9302 ATGTTTGGACTGGATGGCAATGTT-GGAACAGACGAGGAGAACACAGAAAGGCACACAGC 9360 |||||||| |||| |||| |||| | |||| | || || ||||| || || ||||||| Sbjct 516 ATGTTTGGTATGGACGGCAGTGTTAGTAACA-AGGAAGAAAACACGGAGAGACACACAGT 458 Query 9361 AAATGATGTTAACAGGAACATGCA 9384 | ||||| || || ||||||| Sbjct 457 GGAAGATGTCAATAGAGACATGCA 434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30547494015808