Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_003605.1 Length=10080 Score E Sequences producing significant alignments: (Bits) Value seq4616 185 6e-43 >seq4616 Length=1066 Score = 185 bits (204), Expect = 6e-43 Identities = 395/584 (68%), Gaps = 6/584 (1%) Strand=Plus/Minus Query 9267 ATCATTTGCTGGAGTACGAACCAAACCAGAGAGACATATCAAACACACGCGCGACTCAAA 9326 ||||| | || ||||| | || | || | ||||| || ||||| || || ||||| Sbjct 1007 ATCATCTTCTTCAGTACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATT 948 Query 9327 AACAATACGAGTCATGGTACGACGGAGTTAAGAATGACTATGATGTGGATGATAATGGCA 9386 ||||| ||| ||||| || ||||| | |||||| |||| | ||||||||| | Sbjct 947 CACAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAA 888 Query 9387 TGCAATTAATTCTGAACGGATTGATGGTTTGGTGTATAGAAAACGGGACATCCCCGAATA 9446 ||||| | || || || || ||||||||||||||||| || || || ||||| || | | Sbjct 887 TGCAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACA 828 Query 9447 TAAATGGAACATGGGTGATGATGGACAGTGAAGAACAAGTAGAATATGCTCTGAAACCCA 9506 || ||| ||||| |||||||| | ||| ||||| || ||| | | || || Sbjct 827 TATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTT 768 Query 9507 TCATCGAACACGCGAAACCCACGTTTCGCCAGATAATGGCCCATTTTAGTGACGCAGCCG 9566 | || || || || | || | ||| | || || ||||| || |||||| |||| || | Sbjct 767 TGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAG 708 Query 9567 AGGCGTACATTGAGATGAGAAACAAGAAGAAACCGTATATGCCACGATACGGACGGCTAC 9626 | || ||||||| || |||||| | | ||| ||||| || || ||| Sbjct 707 AAGCATACATTGCGAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGA 648 Query 9627 GAGGCTTGAACGATATGGGGTTAGCTCGCTACGCTTTCGACTTTTACGAAACAACATCAG 9686 || |||| || || | | ||| | |||||||||||||| || || | || Sbjct 647 GAAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGA 588 Query 9687 CGACCCCAAATCGGGCGAGAGAGGCGCACAATCAAATGAAGGCAGCTGCTCTAGTGGGAA 9746 || || || |||| | || || |||| || |||||||| || || || | || Sbjct 587 AAACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCT--GCGAAA 530 Query 9747 CA-CAG-AACAGACTGTTTGGAATGGATGGAGGCGGTTCAACCCAGGAAGAGAACACGGA 9804 || ||| || | ||||||| ||||| || | | | | | ||||||| |||||||| Sbjct 529 CACCAGTCGCAAAATGTTTGGTATGGACGGCAGTGTTAGTAACAAGGAAGAAAACACGGA 470 Query 9805 GAGGCACACAGCCGCAGATGTAAATCAGA-ATATGCACACTCTC 9847 ||| ||||||| | |||||| ||| ||| | |||||| ||||| Sbjct 469 GAGACACACAGTGGAAGATGTCAAT-AGAGACATGCACTCTCTC 427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32134376821824