Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_003606.1 Length=9779 Score E Sequences producing significant alignments: (Bits) Value seq4616 188 4e-44 >seq4616 Length=1066 Score = 188 bits (208), Expect = 4e-44 Identities = 386/572 (67%), Gaps = 4/572 (1%) Strand=Plus/Minus Query 8699 CTCAATTTGGACCATCTAATCCAATACAAACCAGATCAGAGAGACATTTCAAATGCACGA 8758 || ||||| | ||||| | || ||||| || | || | |||||||| || | || Sbjct 1017 CTTAATTTAAATCATCTTCTTCAGTACAATCCGCAACAAATTGACATTTCTAACACTCGT 958 Query 8759 GCTACACACACACAATTCCAGTTCTGGTACAACAGAGTCAAGAAAGAGTATGATGTTGAT 8818 || || || ||||||| || ||||| | |||| | ||| || |||| || || Sbjct 957 GCCACTCATTCACAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAAT 898 Query 8819 GATGAGCAAATGAGAATTTTGATGAATGGGTTGATGGTTTGGTGTATAGAGAATGGCACA 8878 ||| | ||||| | | || | ||||| ||||||||||||||||| |||||||| ||| Sbjct 897 GATAATGAAATGCAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACA 838 Query 8879 TCCCCTGATATAAATGGTTATTGGACCATGGTGGATGGGAACAATCAATCAGAGTTTCCA 8938 || || || ||| |||| ||| ||| |||||||| | | ||| || | |||| Sbjct 837 TCTCCAGACATATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCA 778 Query 8939 CTAAAACCAATAGTGGAAAACGCAAAACCAACATTACGACAGTGCATGATGCATTTTAGT 8998 | || || | | || | || | || |||| | || ||| || |||||| Sbjct 777 ATCAAGCCTTTGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGT 718 Query 8999 GATGCCGCAGAAGCATACATTGAAATGAGAAATTTGGATGAGCCGTACATGCCAAGATAC 9058 | || |||||||||||||||| | ||||||| |||| ||||||||| | || Sbjct 717 AACGCGGCAGAAGCATACATTGCGAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTAT 658 Query 9059 GGTCTCCTTAGGAATCTAAATGACAAGAGCCTCGCTCGATACGCATTTGATTTCTATGAG 9118 || || || ||| | | ||||| ||||||||| ||||||| || || ||||||||| Sbjct 657 GGAATCAAGAGAAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAG 598 Query 9119 ATCAATTCGCGCACACCAAATAGGGCGAGAGAGG--CACATGCACAAATGAAGGCAGCAG 9176 | |||||| ||||| ||||||| | || | |||||| || |||||||| |||| Sbjct 597 GTGAATTCGAAAACACCTGATAGGGCTCGCGAAGCTCACATG--CAGATGAAGGCTGCAG 540 Query 9177 CAATTAGAGGGTCCACGAACCACATGTTTGGACTCGACGGGAATGTTGGAGAGAGCTCTG 9236 | | || ||| | | |||||||| | ||||| | |||| | | | | Sbjct 539 CGCTGCGAAACACCAGTCGCAAAATGTTTGGTATGGACGGCAGTGTTAGTAACAAGGAAG 480 Query 9237 AGAACACAGAGCGGCACACAGCTGCAGATGTC 9268 | ||||| ||| | ||||||| | ||||||| Sbjct 479 AAAACACGGAGAGACACACAGTGGAAGATGTC 448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31171369312528