Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_003742.1 Length=9663 Score E Sequences producing significant alignments: (Bits) Value seq4616 105 4e-19 >seq4616 Length=1066 Score = 105 bits (116), Expect = 4e-19 Identities = 226/335 (67%), Gaps = 2/335 (1%) Strand=Plus/Minus Query 8937 ATGGATTATTGGTTTGGTGTATTGAGAATGGCACCTCACCAAACCTCACTGGAAACTGGT 8996 |||| || ||||||||||||| |||||||| || || ||| || | |||| |||| Sbjct 872 ATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGGG 813 Query 8997 ACTTCATGAATAACGATGTTCAAGATGAATATCCATTAAAACCAGTGATTGAAAATGCTC 9056 | ||| || || |||| ||| |||||| | || || ||||||| ||||| Sbjct 812 TTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCTA 753 Query 9057 GGCCGACTTTCAGACAAGTCATGATGCACTTTAGTAATTTGGCCGAAGCATATATTGAGA 9116 ||| | || || ||| | ||| ||||||||||| ||| |||||||| |||| || Sbjct 752 CTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCGA 693 Query 9117 TGCGTAACGCTACCGAAACTTACATTCCACGGTATGCACTGAAACGTAATCTCCGAGACA 9176 | | || ||||| || | ||||| || ||||||| | | || | ||| | |||| Sbjct 692 AGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGACA 633 Query 9177 -CAGAGTGCGCTCGTTACGCCTTTGATTTCTACGAAAAGACTTCTCTCTCGCCTGAAAAG 9235 || | |||| | ||||| || || ||||| || || ||| | ||||| | | Sbjct 632 TTAGCCT-CGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGATAGG 574 Query 9236 GCCATTGAAGTGCAACTACAAATGAAGGCAGCAGC 9270 || |||| || | || |||||||| ||||| Sbjct 573 GCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGC 539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30800243494992