Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_004010.1 Length=9848 Score E Sequences producing significant alignments: (Bits) Value seq4616 163 2e-36 >seq4616 Length=1066 Score = 163 bits (180), Expect = 2e-36 Identities = 289/419 (69%), Gaps = 8/419 (2%) Strand=Plus/Minus Query 8936 TAAATGGTTTGATGGTTTGGTGCATCGAGAATGGAACATCACCGAATGTGAATGGAGTTT 8995 |||||||||||||||||||||| ||||||||||| ||||| || | | ||| || | Sbjct 875 TAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCT 816 Query 8996 GGACAATGATGGATGGTGAGGAACAAGTGGAGTTTCCCCTAAAACCGGTGATCGAAAATG 9055 || ||||||||||| || ||||| || | ||| | || || |||| || ||| Sbjct 815 GGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATG 756 Query 9056 CGAAGCCTACTTTTAGGCAGATAATGGCACATTTTTCTGATGTGGCTGAGGCGTACATAG 9115 | | || | |||||||| || ||||| || ||| | | | ||| || || ||||| | Sbjct 755 CTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTG 696 Query 9116 AGATGCGTAACAAGAGTGAACCATACATGCCACGGTATGGTTTGGTGAGAAATTTGCGGG 9175 || | | || | ||| |||||||| |||||||| | |||||||||| | Sbjct 695 CGAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTG 636 Query 9176 ATATGAGTTTGGCTCGATATGCATTTGATTTCTATGAGATCACATCCCGCACATCCGTCC 9235 | || || | ||| |||| || || || ||||||||| | | || ||| | | Sbjct 635 ACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGATA 576 Query 9236 GAGCACGAGAGGCTCACATCCAGATGAAGGCAGCAGCACTG-AAAACTGCGCAAACTCGC 9294 | || || || |||||||| ||||||||||| ||||| ||| |||| | | |||| Sbjct 575 GGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAACACC----AGTCGC 520 Query 9295 ---TTGTTTGGATTGGATGGTGGCCTAAGTTCACAGGAAGAAAACACAGAAAGACACAC 9350 ||||||| |||| || | | ||| ||||||||||||| || |||||||| Sbjct 519 AAAATGTTTGGTATGGACGGCAGTGTTAGTAACAAGGAAGAAAACACGGAGAGACACAC 461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31392125186752