Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_004011.1 Length=10142 Score E Sequences producing significant alignments: (Bits) Value seq4616 181 7e-42 >seq4616 Length=1066 Score = 181 bits (200), Expect = 7e-42 Identities = 358/519 (69%), Gaps = 8/519 (2%) Strand=Plus/Minus Query 8982 CATTTCAAACACAAGGGCCACTAGGACGCAATTTATGGCGTGGAAAGCAAGGCTACAGGA 9041 |||||| ||||| | |||||| | |||||| | |||| | | | || |||| Sbjct 973 CATTTCTAACACTCGTGCCACTCATTCACAATTTGAGAAGTGGTATG-AGGGAGTGAGGA 915 Query 9042 -TGAATATGGTGTCACTGCGAGCGAAATGAGTATTATTCTAAATGGCCTGATGGTGTGGT 9100 ||| ||||| | | || | |||||| | || |||||||| ||||||| |||| Sbjct 914 ATGATTATGGCCTTAATGATAATGAAATGCAAGTGATGCTAAATGGTTTGATGGTTTGGT 855 Query 9101 GTATAGAGAATGGCACTTCACCAAATATAAATGGTGTTTGGACAATGATGGATGGAGAGG 9160 |||| |||||||| || || ||| | ||| |||||| ||| ||||||||||| || Sbjct 854 GTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGGGTTATGATGGATGGGGAAA 795 Query 9161 AACAGGTTGAATTTCCTTTACGACCAGTTG-TAGAGCACGCACAACCAACTTTGCGGCAA 9219 || ||||| | ||| | | | | ||| | ||||| || || | || ||||| Sbjct 794 CCCAAGTTGATTATCCAAT-CAAGCCTTTGATTGAGCATGCTACTCCGTCATTTAGGCAA 736 Query 9220 ATAATGGCGCACTTCTCGGCAC-TTGCAGAAGCCTACATTGAGATGAGGAATTC-AGAGC 9277 || ||||| ||||| | | || |||||||| ||||||| || ||| ||| | | | Sbjct 735 ATTATGGCTCACTT-TAGTAACGCGGCAGAAGCATACATTGCGAAGAGAAATGCTACTGA 677 Query 9278 AAGCATACATGCCGAGGTATGGATTACAAAGAAATCTAACAGACATGAGTCTCGCACGGT 9337 || ||||||||| |||||||| | | |||||| | || ||||| || ||||| | | Sbjct 676 GAG-GTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGACATTAGCCTCGCTAGAT 618 Query 9338 ATGCATTTGACTTTTATGAAGTCACATCAAGAACACCAGTTAGAGCGCGCGAGGCTCATG 9397 | || || ||||| ||||| || | || | |||||| | ||| || ||||| ||||| Sbjct 617 ACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGATAGGGCTCGCGAAGCTCACA 558 Query 9398 CACAAATGAAAGCAGCAGCTTTGAGGAATTCAAGGCCAAGACTGTTTGGACTGGACGGCA 9457 || ||||| || ||||| || | || | || | | | ||||||| ||||||||| Sbjct 557 TGCAGATGAAGGCTGCAGCGCTGCGAAACACCAGTCGCAAAATGTTTGGTATGGACGGCA 498 Query 9458 ACGTCACAACTATGGATGAGGACACGGAGAGGCACACAG 9496 || | | | ||| || |||||||||| ||||||| Sbjct 497 GTGTTAGTAACAAGGAAGAAAACACGGAGAGACACACAG 459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32332737172576