Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_004013.1 Length=9465 Score E Sequences producing significant alignments: (Bits) Value seq4616 140 2e-29 >seq4616 Length=1066 Score = 140 bits (154), Expect = 2e-29 Identities = 407/617 (66%), Gaps = 21/617 (3%) Strand=Plus/Minus Query 8621 TCCTTAATATTGATCATTTGATAGAATATAAGCCAAAACAGATTGATCTGTATAACACCA 8680 |||||||| | ||||| | | | || || || |||| ||||| | | |||||| Sbjct 1019 TCCTTAATTTAAATCATCTTCTTCAGTACAATCCGCAACAAATTGACATTTCTAACACTC 960 Query 8681 GAGCATCAAAGGCACAGTTCAACACATGGTTTGAGGCCGTCAAGGAGGAGTATGAGCTGG 8740 | || | | |||| || | | |||| ||||| || | | | || |||| || Sbjct 959 GTGCCACTCATTCACAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTA 900 Query 8741 ATGACGACAAGATGAGTGTAATTATGAATGGTTTCATGGTATGGTGCATTGAAAATGGAA 8800 |||| | | ||| || || | |||||||| ||||| ||||| || || ||||| | Sbjct 899 ATGATAATGAAATGCAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTA 840 Query 8801 CCTCACCTGATGTGAATGGAGTGTGGACTATGATGGATGGAGATGAGCAAGTGGAATTTC 8860 | || || || | ||| || ||| |||||||||||| || ||||| || | || Sbjct 839 CATCTCCAGACATATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATC 780 Query 8861 CGCTTAAACCCATTGTGGAAAACGCAAAACCCACACTCAGACAAGTTATGCACCATTTCT 8920 | | || || | | || | || | || || | || ||| ||||| || || Sbjct 779 CAATCAAGCCTTTGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTA 720 Query 8921 CAGACGCAGCTGAAGCGTACATTGAGATGAGAAATTCCGAAGGGTTCTACATGCCCAGGT 8980 |||| || ||||| ||||||| || ||||||| | | | |||||||| ||| Sbjct 719 GTAACGCGGCAGAAGCATACATTGCGAAGAGAAATGCTACTGAGAGGTACATGCCGCGGT 660 Query 8981 ATGGACCCCTAAGGAATTTAAGGGACAAGAGCTTGGCAAGGTATGCTTTCGACTTCTACG 9040 ||||| | || ||||| | |||| ||| | || || || |||||||||||||| | Sbjct 659 ATGGAATCAAGAGAAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATG 600 Query 9041 AGGTAACATCCAAAACTTCTGATAGAGCAAGAGAAGCAATAGCA--CAAATGAAGGCCGC 9098 |||| | || ||||| ||||||| || | ||||| | || || |||||||| || Sbjct 599 AGGTGAATTCGAAAACACCTGATAGGGCTCGCGAAGC--TCACATGCAGATGAAGGCTGC 542 Query 9099 AGCTCTCGCCAACGTAAACACCAG------GATGTTTGGCCTGGATGGGAACG-TGGCAA 9151 ||| || || ||||||||| |||||||| |||| || | | | | || Sbjct 541 AGCGCT-GC-----GAAACACCAGTCGCAAAATGTTTGGTATGGACGGCAGTGTTAGTAA 488 Query 9152 CAGTTAGTGAGAACACTGAGAGGCATACTGCTGCTGATGTGAATCAGA-ACATGCACTCC 9210 || | || ||||| ||||| || || | | ||||| ||| ||| |||||||||| Sbjct 487 CAAGGA-AGAAAACACGGAGAGACACACAGTGGAAGATGTCAAT-AGAGACATGCACTCT 430 Query 9211 CTCTTAGGGATGACGCA 9227 ||| | || ||| |||| Sbjct 429 CTCCTGGGTATG-CGCA 414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30166770116784