Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_004035.1 Length=9624 Score E Sequences producing significant alignments: (Bits) Value seq4616 132 3e-27 >seq4616 Length=1066 Score = 132 bits (146), Expect = 3e-27 Identities = 310/465 (67%), Gaps = 2/465 (0%) Strand=Plus/Minus Query 8790 CTACTTGGGTATAAGCCACAACAGCAAGACATCTCAAACACACGAGCAACACGAGCAGAG 8849 || ||| ||| || || ||||| ||||| || ||||| || || || | || | Sbjct 1002 CTTCTTCAGTACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATTCACAA 943 Query 8850 TTTGATAGGTGGTACGCAGCCGTACAAAAAGAATATGAACTTGATGACACACAAATGACA 8909 ||||| | |||||| | | || || || |||| ||| |||| | ||||| | Sbjct 942 TTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAATGCAA 883 Query 8910 GTTGTTATGAGCGGACTAATGGTATGGTGCATAGAAAATGGTTGCTCACCGAACATCAAT 8969 || | | | || | ||||| ||||| || || |||||| || || |||| | Sbjct 882 GTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCT 823 Query 8970 GGTGTTTGGACCATGATGGATGGAGAAGAACAAAGAACATT-TCCTTTAAAGCCAATAAT 9028 ||||| ||| ||||||||||| ||| | | ||| ||| ||| | ||||| | || Sbjct 822 GGTGTCTGGGTTATGATGGATGGGGAA-ACCCAAGTTGATTATCCAATCAAGCCTTTGAT 764 Query 9029 TGAAAATGCTTCTCCAACATTTAGGCAGATTATGCATCACTTTAGTGATGCAGCTGAAGC 9088 ||| ||||| |||| |||||||||| |||||| |||||||||| | || || ||||| Sbjct 763 TGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGC 704 Query 9089 GTATATAGAATACCGTAACTCAACGGAACGCTACATGCCAAGATACGGACTTCAGCGAAA 9148 || || | | | || | || || | |||||||| | || ||| | || |||| Sbjct 703 ATACATTGCGAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAA 644 Query 9149 CTTGACCGACTTCAATTTAGCACGTTATGCTTTTGATTTCTACGAGATCACATCACGTAC 9208 ||||| ||| | | | || | || ||||| || ||||| ||| | | || || Sbjct 643 TTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAAC 584 Query 9209 AACAGCCCGTGCTAAGGAGGCCCACATGCAGATGAAAGCTGCAGC 9253 | | | | ||| || || |||||||||||||| |||||||| Sbjct 583 ACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGC 539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30675468435648