Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_004039.1 Length=9585 Score E Sequences producing significant alignments: (Bits) Value seq4616 138 7e-29 >seq4616 Length=1066 Score = 138 bits (152), Expect = 7e-29 Identities = 404/610 (66%), Gaps = 22/610 (4%) Strand=Plus/Minus Query 8715 AAAGGTAAGAGTGTCGTTAACCTAGATCACTTGCTATCTTACAAACCAAAGCAAGTAGAC 8774 || || |||| |||| |||| || |||| | || ||||| || | ||| | ||| Sbjct 1032 AAGGGGAAGACTGTCCTTAATTTAAATCATCTTCTTCAGTACAATCCGCAACAAATTGAC 973 Query 8775 TTGTCAAATGCTAGAGCCACCCACGAACAATTCCAAAACTGGTATGATGGCGTTATGGCA 8834 | || || || | ||||| || |||||| | || |||||||| || || | || | Sbjct 972 ATTTCTAACACTCGTGCCACTCATTCACAATTTGAGAAGTGGTATGAGGGAGTGA-GGAA 914 Query 8835 AG-TTATGAGTTAGAGGA--ATCAAGCATGGAGATCATTCTAAATGGCTTCATGGTATGG 8891 | ||||| | | || || || ||| | | || |||||||| || ||||| ||| Sbjct 913 TGATTATGGCCTTAATGATAATGAA--ATGCAAGTGATGCTAAATGGTTTGATGGTTTGG 856 Query 8892 TGCATTGAGAATGGAACCTCTCCAGACATTAATGGAGTTTGGACCATGATGGATAATGAG 8951 || || |||||||| || ||||||||||| ||| || ||| ||||||||| | | Sbjct 855 TGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGGGTTATGATGGAT---GGG 799 Query 8952 GAA---CAAGTGTCATATCCATTAAAACCCATGCTTGACCATGCAAAGCCTTCTTTAAGG 9008 ||| ||||| |||||| | || || || |||| ||||| | || || || ||| Sbjct 798 GAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCTACTCCGTCATTTAGG 739 Query 9009 CAAATTATGAGACATTTCAGCGCACTC-GCAGAGGCGTACATTGAGATGAGAA---GTCG 9064 ||||||||| || || || || | ||||| || ||||||| || ||||| | Sbjct 738 CAAATTATGGCTCACTTTAG-TAACGCGGCAGAAGCATACATTGCGAAGAGAAATGCTAC 680 Query 9065 TGAGAAACCATACATGCCCAGGTATGGTCTTCAACGCAACCTGAGAGATCAAAGTTTGGC 9124 ||||| |||||||| ||||||| | | | || ||| || || | || Sbjct 679 TGAGA---GGTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGACATTAGCCTCGC 623 Query 9125 AAGGTATGCTTTTGATTTCTATGAGATCACTGCAACCACTCC-GATCAGAGCCAAAGAGG 9183 || || ||||| || ||||||||| | | | | | || || ||| || || || | Sbjct 622 TAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGAT-AGGGCTCGCGAAG 564 Query 9184 CGCATCTGCAGATGAAAGCAGCAGCGCTGAAGAATTCGAACACTAATATGTTTGGACTGG 9243 | || |||||||||| || ||||||||| || | | || |||||||| ||| Sbjct 563 CTCACATGCAGATGAAGGCTGCAGCGCTGCGAAACACCAGTCGCAAAATGTTTGGTATGG 504 Query 9244 ACGGAAATGTCACAACTTCAGAAGAGGACACAGAAAGGCACACAGCAACGGATGTTAATC 9303 |||| | ||| | | ||||| |||| || || ||||||| ||||| ||| Sbjct 503 ACGGCAGTGTTAGTAACAAGGAAGAAAACACGGAGAGACACACAGTGGAAGATGTCAATA 444 Query 9304 GCAACATGCA 9313 | ||||||| Sbjct 443 GAGACATGCA 434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30550693376304