Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_004426.1 Length=9878 Score E Sequences producing significant alignments: (Bits) Value seq4616 181 7e-42 >seq4616 Length=1066 Score = 181 bits (200), Expect = 7e-42 Identities = 378/561 (67%), Gaps = 8/561 (1%) Strand=Plus/Minus Query 8770 CTTAATTTGGCTCATCTACTCGAATACAAGCCAAGCCAAGTTGACATTTCAAATGCGCGA 8829 |||||||| |||||| || | ||||| || ||| |||||||||| || | || Sbjct 1017 CTTAATTTAAATCATCTTCTTCAGTACAATCCGCAACAAATTGACATTTCTAACACTCGT 958 Query 8830 TCAACTCAAGGCCAATTCAACAATTGGTTTACAGAAGTTAAGAAGGCCTATGATGTTGAA 8889 | ||||| ||||| | || |||| | | ||| | ||| | |||| || | Sbjct 957 GCCACTCATTCACAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAAT 898 Query 8890 GATCATGAAATGGGTACGGTGTTAAATGGATTGATGGTCTGGTGCATCGAAAATGGAACT 8949 ||| |||||||| | || ||||||| |||||||| ||||| ||||| ||||| || Sbjct 897 GATAATGAAATGCAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACA 838 Query 8950 TCACCAAATGTGAATGGAGTTTGGACTATGATGGATGGTGAAGACCAAGTTGAGTTCCCA 9009 || ||| | | ||| || ||| |||||||||||| ||| ||||||||| | ||| Sbjct 837 TCTCCAGACATATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCA 778 Query 9010 CTAAAGCCAGTGGTAGAGAACGCAAAGCCTACTTTTAGGCAAATTATGGCGCATTTTTCC 9069 | ||||| || | ||| | || | || | ||||||||||||||||| || ||| Sbjct 777 ATCAAGCCTTTGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGT 718 Query 9070 GATGTAGCCGAAGCGTACATTGAGATGCGCAACAAAAGCGAACCATACATGCCACGGTAT 9129 | | || ||||| ||||||| || | | || | || |||||||| |||||| Sbjct 717 AACGCGGCAGAAGCATACATTGCGAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTAT 658 Query 9130 GGTCTGGTGAGAAATCTGCGAGATATGAGCTTAGCTCGATATGCATTTGATTTTTACGAA 9189 || | ||||||| || || || ||| | ||| |||| || || || || || || Sbjct 657 GGAATCAAGAGAAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAG 598 Query 9190 ATCACATCTCGCACATCCGTCCGGGCAAGAGAAGCTCATATTCAGATGAAAGCAGCAGCT 9249 | | || ||| | | |||| | |||||||| || |||||||| || ||||| Sbjct 597 GTGAATTCGAAAACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCG 538 Query 9250 CT-CAAAACTGCTCAAACTCG---TTTGTTTGGATTGGATGGTGGCATTAGTACACAGGA 9305 || | |||| | | ||| ||||||| |||| || | |||||| |||| Sbjct 537 CTGCGAAACACC----AGTCGCAAAATGTTTGGTATGGACGGCAGTGTTAGTAACAAGGA 482 Query 9306 GGAAAACACAGAGAGGCACAC 9326 |||||||| ||||| ||||| Sbjct 481 AGAAAACACGGAGAGACACAC 461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31488106001632