Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_004573.1 Length=9899 Score E Sequences producing significant alignments: (Bits) Value seq4616 120 2e-23 >seq4616 Length=1066 Score = 120 bits (132), Expect = 2e-23 Identities = 233/344 (68%), Gaps = 0/344 (0%) Strand=Plus/Minus Query 8938 ATTCTGAATGGTCTCATGGTTTGGTGTATAGAGAATGGAACCTCACCGAATGTTAATGGG 8997 || || |||||| | |||||||||||||| |||||||| || || || | | ||| Sbjct 879 ATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGT 820 Query 8998 GTTTGGACAATGATGGATGGTGAGGAACAAGTTGAATTTCCGCTAAAGCCAGTGGTGGAA 9057 || ||| ||||||||||| || |||||||| | ||| | ||||| || | || Sbjct 819 GTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAG 760 Query 9058 AACGCAAAGCCTACTTTTAGGCAAATTATGGCACATTTTTCAGATGTTGCCGAAGCGTAT 9117 | || | || | ||||||||||||||||| || ||| | | || ||||| || Sbjct 759 CATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATAC 700 Query 9118 ATTGAAATGCGCAACAAGAGTGAGCCGTATATGCCACGATACGGTTTGGTGAGAAATTTG 9177 |||| | | | || | |||| ||| ||||| || || || | |||||||||| Sbjct 699 ATTGCGAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAATTTG 640 Query 9178 CGAGATATGAGTTTGGCTCGTTATGCATTTGATTTCTATGAGATCACGTCTCGCACATCC 9237 || || || | ||| | || || || || ||||||||| | | || ||| | Sbjct 639 ACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCT 580 Query 9238 GTCCGAGCAAGAGAAGCTCACATCCAGATGAAAGCAGCAGCTCT 9281 | | || | ||||||||||| |||||||| || ||||| || Sbjct 579 GATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCT 536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31555292572048