Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_004752.1 Length=9608 Score E Sequences producing significant alignments: (Bits) Value seq4616 120 2e-23 >seq4616 Length=1066 Score = 120 bits (132), Expect = 2e-23 Identities = 407/632 (64%), Gaps = 4/632 (1%) Strand=Plus/Minus Query 8790 TTTAGTAATAAGATGGTTTTGCCTATGGTTCGGGGAAAGTCTATACTGAATCTCGACCAT 8849 |||| | ||||||||||| | || | || ||| ||| || | || ||| | | ||| Sbjct 1062 TTTACTGATAAGATGGTTCTACCGAGAATTAAGGGGAAGACTGTCCTTAATTTAAATCAT 1003 Query 8850 CTTGTAAAGTATGAGCCCGCTCAAGTTTTTCTATCAAATACACGAGCTACACAAGCACAG 8909 ||| | |||| | || ||| || | || || || || || || || |||| Sbjct 1002 CTTCTTCAGTACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATTCACAA 943 Query 8910 TTTGATGTATGGTACATGGCAATCAAAAGTTTTTATGAACTCGAAGACGAGGAGATGGGT 8969 ||||| ||||| || | | | | | ||||| || | || | || ||| Sbjct 942 TTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAATGCAA 883 Query 8970 ATGATCATGAATGGACTGATGGTGTGGTGCATAGAAAACGGCACTTCACCAAATTTATCC 9029 |||| | ||||| ||||||| ||||| || || || || || || ||| | |||| Sbjct 882 GTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCT 823 Query 9030 GGAATGTGGACAATGATAGACGGCGGGGAGCAAGTGGAATATCCATTAAAGCCGATCATA 9089 || | ||| ||||| || || | ||||| || |||||| | ||||| | || Sbjct 822 GGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATT 763 Query 9090 GAAAATGCCAAACCCACATTTCGTCAGATAATGATGCATTTCAGTGACGCAGCTGAAGCG 9149 || |||| | || ||||| | || || ||| || || ||| |||| || ||||| Sbjct 762 GAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCA 703 Query 9150 TACATTGAATTGCGGAACTCAAAAGAACCGTATATGCCCCGATACGGTATTCAGCGCAAC 9209 ||||||| | | || | | || ||| ||||| || || || || || | || Sbjct 702 TACATTGCGAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAAT 643 Query 9210 TTGAGGGA--TTACTCACTTGCAAGGTACGCATTCGATTTCTTAGAGATAACCTCTAAAA 9267 |||| || ||| | | || || ||||| ||||| |||| ||| | | || |||| Sbjct 642 TTGACTGACATTAGCCTC--GCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAA 585 Query 9268 CTCCAGTTCGAGCGCGTGAAGCACACCATCAGATGAAGGCAGCAGCAATTGGAAACAAGG 9327 | || | | | || || ||||| ||| ||||||||||| ||||| | |||||| Sbjct 584 CACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAACACCA 525 Query 9328 TTAACAAAATGTTTGGATTTGATGGCAAAGTGGGCCTCCCAGAAGAGGATACAGAAAGGC 9387 | |||||||||||| | || |||| || | | ||||| | || || || | Sbjct 524 GTCGCAAAATGTTTGGTATGGACGGCAGTGTTAGTAACAAGGAAGAAAACACGGAGAGAC 465 Query 9388 ACGCTGCGGGTGATGTCACAAAAGACATGCAC 9419 || | | || ||||||| | |||||||||| Sbjct 464 ACACAGTGGAAGATGTCAATAGAGACATGCAC 433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30624278667712