Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_005028.1 Length=10155 Score E Sequences producing significant alignments: (Bits) Value seq4616 190 1e-44 >seq4616 Length=1066 Score = 190 bits (210), Expect = 1e-44 Identities = 382/561 (68%), Gaps = 8/561 (1%) Strand=Plus/Minus Query 9349 CTTTTACAATACACACCAGATCAAGTGGACATTTCAAATACCAGGGCAAGTATTTCACAG 9408 ||| | || |||| || | ||| | |||||||| || || | || | | |||||| Sbjct 1002 CTTCTTCAGTACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATTCACAA 943 Query 9409 TTTAATACATGGTACAACGCTGTGAAGGAATCCT-ATGGTGTGTCTGATGAAGAAATGGG 9467 ||| | | ||||| | | |||| ||||| | |||| | |||| | |||||| Sbjct 942 TTTGAGAAGTGGTATGAGGGAGTGA-GGAATGATTATGGCCTTAATGATAATGAAATGCA 884 Query 9468 AATAATTTTGAATGGATTAATGGTTTGGTGTATTGAAAATGGAACATCTCCAAACATTAA 9527 | | || | ||||| || |||||||||||||| || ||||| ||||||||| |||| Sbjct 883 AGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATC 824 Query 9528 TGGCATGTGGTTTATGATGCAAGGGGAAGAACAAATCGAATACCCCCTTCAACCAATAGT 9587 ||| | ||| |||||||| | |||||| ||| | || || || | | || | | Sbjct 823 TGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGAT 764 Query 9588 GGAAAACGCAAAACCCACTTTGCGTCAGATTATGGCTCACTTTAGCAATGTTGCTGAAGC 9647 || | || | || | || | || ||||||||||||||||| || | || ||||| Sbjct 763 TGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGC 704 Query 9648 ATACATCGAAAAGAGAAAT--TA-TGAGAAGCCATATATGCCGAGGTACGGTATTCAACG 9704 |||||| | ||||||||| || ||||| | || |||||| |||| || || | | Sbjct 703 ATACATTGCGAAGAGAAATGCTACTGAGAGG---TACATGCCGCGGTATGGAATCAAGAG 647 Query 9705 GAACCTCACCGACATGAGTTTGGCGCGATATGCTTTTGATTTCTATGAAATGACATCAAG 9764 || | || ||||| || | || |||| ||||| || |||||||| ||| || | Sbjct 646 AAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAA 587 Query 9765 GACGCCAGCTCGGGCCCGGGAAGCCCACATCCAGATGAAAGCTGCAGCATTGCGAGATGC 9824 || || | | |||| || ||||| ||||| |||||||| |||||||| ||||| | | Sbjct 586 AACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAACAC 527 Query 9825 GAATAATAAGATGTTTGGACTGGATGGAAAAGTCGGAAATGCGACTGAGAACACGGAGCG 9884 | | || |||||||| |||| || | || | || | || ||||||||| | Sbjct 526 CAGTCGCAAAATGTTTGGTATGGACGGCAGTGTTAGTAACAAGGAAGAAAACACGGAGAG 467 Query 9885 CCACACCGCAGACGATGTTAA 9905 ||||| | || ||||| || Sbjct 466 ACACACAGTGGAAGATGTCAA 446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32374328859024