Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_005029.1 Length=10538 Score E Sequences producing significant alignments: (Bits) Value seq4616 208 5e-50 >seq4616 Length=1066 Score = 208 bits (230), Expect = 5e-50 Identities = 365/530 (69%), Gaps = 6/530 (1%) Strand=Plus/Minus Query 9789 CAATTCGAAAATTGGTACAATGCAGTAAAGAAGGATTATGATGTTAATGATGAACAGATG 9848 ||||| || || ||||| | | ||| | ||| ||||||| |||||||| | | ||| Sbjct 945 CAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAATG 886 Query 9849 AAGATTTTACTAAATGGTTTAATGGTTTGGTGTATTGAGAATGGAACATCTCCTAATTTG 9908 | | | ||||||||||| |||||||||||||| |||||||| |||||||| | | Sbjct 885 CAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATA 826 Query 9909 TCAGGAAATTGGACTATGATGGATGGTGACGAGCAAGTCGAATATCCACTAGCGCCAATT 9968 || || ||| |||||||||||| || ||||| || |||||| | ||| | Sbjct 825 TCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTG 766 Query 9969 GTGGATAACGCAAAACCAACATTTAGACAGATAATGGCGCATTTCAGTGATGCAGCTGAA 10028 | || | || | || ||||||| || || ||||| || || ||| | || || ||| Sbjct 765 ATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAA 706 Query 10029 GCATACATTGAATATCGAAATGCTACAGAGAAATATATGCCCCGATATGGACTTCAGCGA 10088 |||||||||| | |||||||||| |||| || ||||| || |||||| | || || Sbjct 705 GCATACATTGCGAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGA 646 Query 10089 AATTTAACAGAACTTAGTTTGGCACGTTATGCATTTGACTTTTATGAGATGACTTCAAAG 10148 ||||| || || |||| | || | || || || ||||| |||||| ||| ||| || Sbjct 645 AATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAA 586 Query 10149 ACTCCTAAACGAGCGAAAGAAGCACACATGCAAATGAAGGCGGCTGCGATTAGAGGGGCA 10208 || ||| | | || ||||| |||||||| |||||||| || ||| | || Sbjct 585 ACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGA---AAC 529 Query 10209 ACTAATCG---TTTGTTTGGCCTGGATGGTAACGTGAACACAACAGAAGAGGACACGGAA 10265 || | ||| ||||||| |||| || | || | | | ||||| ||||||| Sbjct 528 ACCAGTCGCAAAATGTTTGGTATGGACGGCAGTGTTAGTAACAAGGAAGAAAACACGGAG 469 Query 10266 AGACACACAGCTGCGGATATTAATAAGAACCAGCACACGCTGCTTGGTAT 10315 |||||||||| | ||| | |||| || |||| | || || ||||| Sbjct 468 AGACACACAGTGGAAGATGTCAATAGAGACATGCACTCTCTCCTGGGTAT 419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 33599683928992