Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_005288.1 Length=9644 Score E Sequences producing significant alignments: (Bits) Value seq4616 120 2e-23 >seq4616 Length=1066 Score = 120 bits (132), Expect = 2e-23 Identities = 298/446 (67%), Gaps = 6/446 (1%) Strand=Plus/Minus Query 8976 AATGGTCTGATGGTTTGGTGCATAGAGAATGGCACCTCACCAAATGTAAATGGCGTGTGG 9035 |||||| ||||||||||||| || |||||||| || || ||| | || ||| || ||| Sbjct 873 AATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGG 814 Query 9036 CTCATGATGGACGGAGATCAGCAAGTTGAATTTCCTTTACGTCCTATACTTGAACACGCA 9095 | |||||||| || || |||||||| | ||| | ||| | |||| || || Sbjct 813 GTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCT 754 Query 9096 AAACCGACGCTGCGCCAAATCATGGCGCATTTCTCAAACCTCGCTGAAGCTTATATTGAG 9155 | ||| | | | ||||| ||||| || || ||| || ||||| || |||| | Sbjct 753 ACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCG 694 Query 9156 AAGCAAAAT-TTAGAGAAACCGTACATGCCTAGGTACGGCCTTCAGCGAAATCTCACCGA 9214 ||| |||| || || | ||||||||| |||| || | || ||||| | || || Sbjct 693 AAGAGAAATGCTACTGAGA-GGTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGA 635 Query 9215 CTTCAATCTAGCACGATTTGCTTTTGATTTCTATGAAGTTACTTCACGCACGCCAGCACG 9274 | | | || || ||| ||||| || |||||||| || | ||| || || | | Sbjct 634 CATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGATAG 575 Query 9275 CGCTAAAGAAGCACACTTCCAAATGAAAACAGCCGCTTTACGCGGAA-AACAATCG-AAG 9332 ||| ||||| ||| | || ||||| | || || | ||| || | || ||| || Sbjct 574 GGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCT--GCGAAACACCAGTCGCAAA 517 Query 9333 CTATTTGGGCTAGATGGAAAGGTGAACACCCAAGATGAGGACACGGAGAGGCATACAGCA 9392 | ||||| | || || | || | | | | || || |||||||||| || |||| Sbjct 516 ATGTTTGGTATGGACGGCAGTGTTAGTAACAAGGAAGAAAACACGGAGAGACACACAGTG 457 Query 9393 GATGATGTTAATAAAAACATGCACTC 9418 || ||||| |||| | |||||||||| Sbjct 456 GAAGATGTCAATAGAGACATGCACTC 431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30739455645568