Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_005304.1 Length=9591 Score E Sequences producing significant alignments: (Bits) Value seq4616 181 6e-42 >seq4616 Length=1066 Score = 181 bits (200), Expect = 6e-42 Identities = 321/466 (69%), Gaps = 14/466 (3%) Strand=Plus/Minus Query 8836 TACAAGCCAGAACAGGTTGACCTTTCAAACACCAGAGCCACAAAGGAACAATTTGACAAT 8895 ||||| || |||| ||||| |||| ||||| | ||||| | ||||||||| || Sbjct 993 TACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATTCACAATTTGAGAAG 934 Query 8896 TGGTATGAAGCAGTCATGAGAGAGTACGATGTGTCGGACTCTCAAATGGGTGTGATTATG 8955 |||||||| | ||| | || || || | | || | ||||| ||||| | Sbjct 933 TGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAATGCAAGTGATGCTA 874 Query 8956 AATGGACTCATGGTGTGGTGTATTGAGAACGGCACATCACCAAATCTTAGTGGAGACTGG 9015 ||||| | ||||| |||||||| ||||| || ||||| ||| | | ||| | |||| Sbjct 873 AATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGG 814 Query 9016 GTTATGATGGATGGAGAGGAACAAGTTTCTTTCCCTTTAAAGCCGATAGTAGAAAATGCT 9075 |||||||||||||| || |||||| || || | ||||| | | || ||||| Sbjct 813 GTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCT 754 Query 9076 AAACCATCTTTTCGGCAAATCATGCATCACTTTTCTGATGCAGCAGAAGCGTATATT--- 9132 | || || ||| ||||||| ||| ||||||| | | || |||||||| || ||| Sbjct 753 ACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCG 694 Query 9133 ----GAAATGCGCAACAGAGAAAGGCCATACATGCCTCGTTATGGCGCTCAGAGAAATCT 9188 ||||| || || ||| ||| |||||||| || ||||| |||||||| | Sbjct 693 AAGAGAAAT--GCTACTGAG--AGG---TACATGCCGCGGTATGGAATCAAGAGAAATTT 641 Query 9189 GAGAGACAAGACGCTAGCTCGCTATGCATTCGATTTCTATGAGGTCACTTCACGAACAAC 9248 || |||| | || ||| | || || ||||| ||||||||||| | ||| |||| | Sbjct 640 GACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACC 581 Query 9249 TGATCGTGCACGTGAAGCTCATTTCCAAATGAAGGCGGCGGCGTTG 9294 |||| | || || |||||||| | || |||||||| || ||| || Sbjct 580 TGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTG 535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30569889539280