Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_005778.1 Length=9711 Score E Sequences producing significant alignments: (Bits) Value seq4616 259 3e-65 >seq4616 Length=1066 Score = 259 bits (286), Expect = 3e-65 Identities = 417/591 (71%), Gaps = 14/591 (2%) Strand=Plus/Minus Query 8831 CACCTTCTTGATTATGCTCCTGATCAAAT--ACATTTGAGTAACACAAGAGC-ACTACAA 8887 || |||||| | || ||| | ||||| |||||| |||||| | || ||| || Sbjct 1005 CATCTTCTTCAGTACAATCCGCAACAAATTGACATTTC--TAACACTCGTGCCACT-CAT 949 Query 8888 TCACAGTTTGCATCCTGGTATGAAGGTGTGAAAAATGACTATGATGTCACAGATGAACAG 8947 ||||| |||| |||||||| || |||| ||||| |||| | | ||| | | Sbjct 948 TCACAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAA 889 Query 8948 ATGCAAATAATACTGAATGGATTGATGGTTTGGTGTATTGAGAATGGGACTTCACCAAAC 9007 |||||| | || || ||||| ||||||||||||||||| |||||||| || || ||| || Sbjct 888 ATGCAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGAC 829 Query 9008 ATTAATGGCTACTGGGTTATGATGGATGGAGATGAACAAGTTGAATACCCAATAAAACCA 9067 || ||| |||||||||||||||||| || |||||||| || ||||| || || Sbjct 828 ATATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCT 769 Query 9068 TTAATCGACCATGCCAAACCATCATTTAGACAAATCATGGCACACTTTAGTAATCTTGCT 9127 || || || ||||| | || |||||||| ||||| ||||| ||||||||||| || Sbjct 768 TTGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCA 709 Query 9128 GAAGCGTACATTGAGAAGCGCAA---TTCTGAGAAGCCTTATATGCCAAGATATGGGCTT 9184 ||||| ||||||| |||| | || | |||||| | || ||||| | ||||| | Sbjct 708 GAAGCATACATTGCGAAGAGAAATGCTACTGAGAGG---TACATGCCGCGGTATGGAATC 652 Query 9185 CAAAGAAACCTTACCGATATGTCATTAGCGCGATATGCTTTCGATTTATACGAAATGACA 9244 | ||||| | || || || | || |||| |||||||| || || || ||| Sbjct 651 AAGAGAAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAAT 592 Query 9245 TCGAAAACTCCCGTCCGAGCTCGTGAGGCACACATTCAAATGAAAGCAGCTGCGTTACGT 9304 |||||||| || | | ||||| || || ||||| || ||||| || || ||| | || Sbjct 591 TCGAAAACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGA 532 Query 9305 GGCGTAAGCAACAGGATGTTTGGACTGGACGGTAG-GGTAGGCACACAGGAAGAGGACAC 9363 | || || |||||||| ||||||| || | ||| ||| ||||||| |||| Sbjct 531 AACACCAGTCGCAAAATGTTTGGTATGGACGGCAGTGTTAGTAACA-AGGAAGAAAACAC 473 Query 9364 TGAACGGCACACAGCAGAGGATGTAAATAGAAACATGCATAATCTGCTGGG 9414 || | ||||||| || ||||| |||||| ||||||| ||| ||||| Sbjct 472 GGAGAGACACACAGTGGAAGATGTCAATAGAGACATGCACTCTCTCCTGGG 422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30953812798800