Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_005903.1 Length=9540 Score E Sequences producing significant alignments: (Bits) Value seq4616 93.3 3e-15 >seq4616 Length=1066 Score = 93.3 bits (102), Expect = 3e-15 Identities = 325/506 (64%), Gaps = 6/506 (1%) Strand=Plus/Minus Query 8733 CCGAAATTTAAAGGGAAAGCCATGGTAAATGTAGATCATTTATTGGTTTACAAACCGGAT 8792 |||| | |||| ||||| | | | ||| || ||||| | | ||||| ||| | Sbjct 1041 CCGAGAATTAAGGGGAAGACTGTCCTTAATTTAAATCATCTTCTTCAGTACAATCCGCAA 982 Query 8793 CAGAGGGATCTTTCCAACAAACGTGCAACCCAGAGACAAGTGGATAACTGGGTTGAAAAG 8852 || | || |||| |||| ||||| || || |||| | || || ||| ||| Sbjct 981 CAAATTGACATTTCTAACACTCGTGCCACTCATTCACAATTTGAGAAGTGGTATGAGGGA 922 Query 8853 GTGGCGAAAGACTATGGTGTTGAAGAATCTAGCATGGACATAATAATAAATGGTTTCATG 8912 ||| ||| || ||||| || | || | ||| | | || |||||||||| ||| Sbjct 921 GTGAGGAATGATTATGGCCTTAATGATAATGAAATGCAAGTGATGCTAAATGGTTTGATG 862 Query 8913 GTTTGGGCTCTTGATAATGGGACTTCCCCAAACATCACGGGCACTTGGATCATGATGGAC 8972 |||||| | | || ||||| || || ||| |||| | || ||| | |||||||| Sbjct 861 GTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGGGTTATGATGGAT 802 Query 8973 AAAGAGGAA---CAACGCGAATATCCGATTGAACCACTTGTTCGCCATGCTCAACCAACG 9029 | |||| ||| || ||||| || | || | || |||||| || | Sbjct 801 ---GGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCTACTCCGTCA 745 Query 9030 CTGCGTCAAATTATGATGCATCTTAGTGACACAGCGACTGGCTACATAGTTTTACGTAAC 9089 | | ||||||||| || ||||| || | || | ||||| | | || Sbjct 744 TTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCGAAGAGAAAT 685 Query 9090 ACTAAAGAAAGGTATATGCCTGGGTATGGATTAAAGCGTAATCTTAATGATATGAGCTTA 9149 ||| || ||||| ||||| |||||||| | ||| | ||| | | ||| || ||| | Sbjct 684 GCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGACATTAGCCTC 625 Query 9150 GCTCCATATGCCTTCGACTTCTATGAAATAACATCCGAAACTCCAAATCGTGTGCGTGAG 9209 ||| ||| || |||||||||||||| | | || |||| || || | | || || Sbjct 624 GCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGATAGGGCTCGCGAA 565 Query 9210 GCGCACTTGCAGATGAAGGCCGCAGC 9235 || ||| ||||||||||||| ||||| Sbjct 564 GCTCACATGCAGATGAAGGCTGCAGC 539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30406722153984